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Title
Detecting circular RNAs: bioinformatic and experimental challenges
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 17, Issue 11, Pages 679-692
Publisher
Springer Nature
Online
2016-10-14
DOI
10.1038/nrg.2016.114
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Note: Only part of the references are listed.- Designing alternative splicing RNA-seq studies. Beyond generic guidelines
- (2015) Camille Stephan-Otto Attolini et al. BIOINFORMATICS
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- (2015) Abd A. Alhasan et al. BLOOD
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- Identification and Characterization of Hypoxia-Regulated Endothelial Circular RNANovelty and Significance
- (2015) Jes-Niels Boeckel et al. CIRCULATION RESEARCH
- Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress
- (2015) Sergei Filichkin et al. CURRENT OPINION IN PLANT BIOLOGY
- Combinatorial control ofDrosophilacircular RNA expression by intronic repeats, hnRNPs, and SR proteins
- (2015) Marianne C. Kramer et al. GENES & DEVELOPMENT
- Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
- (2015) Agnieszka Rybak-Wolf et al. MOLECULAR CELL
- RNA circularization strategies in vivo and in vitro
- (2015) Sonja Petkovic et al. NUCLEIC ACIDS RESEARCH
- Comparison of circular RNA prediction tools
- (2015) Thomas B. Hansen et al. NUCLEIC ACIDS RESEARCH
- A penalized likelihood approach for robust estimation of isoform expression
- (2015) Hui Jiang et al. Statistics and Its Interface
- Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
- (2015) Andranik Ivanov et al. Cell Reports
- Biogenesis, identification, and function of exonic circular RNAs
- (2015) Iju Chen et al. Wiley Interdisciplinary Reviews-RNA
- The Impact of Normalization Methods on RNA-Seq Data Analysis
- (2015) J. Zyprych-Walczak et al. Biomed Research International
- Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
- (2015) Linda Szabo et al. GENOME BIOLOGY
- CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
- (2015) Yuan Gao et al. GENOME BIOLOGY
- Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems
- (2014) Ruolin Liu et al. BMC BIOINFORMATICS
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
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- (2014) Dongming Liang et al. GENES & DEVELOPMENT
- Alternative Splicing in Plant Immunity
- (2014) Shengming Yang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- circRNA Biogenesis Competes with Pre-mRNA Splicing
- (2014) Reut Ashwal-Fluss et al. MOLECULAR CELL
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- (2014) William R Jeck et al. NATURE BIOTECHNOLOGY
- Is an observed non-co-linear RNA product spliced intrans, incisor justin vitro?
- (2014) Chun-Ying Yu et al. NUCLEIC ACIDS RESEARCH
- Circular RNA Is Expressed across the Eukaryotic Tree of Life
- (2014) Peter L. Wang et al. PLoS One
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- (2014) Yang Wang et al. RNA
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- (2014) Erika Lasda et al. RNA
- Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
- (2014) Jakub O. Westholm et al. Cell Reports
- A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
- (2014) Steve Hoffmann et al. GENOME BIOLOGY
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- (2014) Nicholas F Lahens et al. GENOME BIOLOGY
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- (2013) Ayat Hatem et al. BMC BIOINFORMATICS
- Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency
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- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
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- (2013) Sebastian Memczak et al. NATURE
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- Improved Discovery of Molecular Interactions in Genome-Scale Data with Adaptive Model-Based Normalization
- (2013) Julia Salzman et al. PLoS One
- Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing
- (2013) S. Mohr et al. RNA
- Cell-Type Specific Features of Circular RNA Expression
- (2013) Julia Salzman et al. PLoS Genetics
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
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- (2012) W. R. Jeck et al. RNA
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- (2011) J. R. Grant et al. BIOINFORMATICS
- miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
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- (2010) Christin E. Burd et al. PLoS Genetics
- A large genome center's improvements to the Illumina sequencing system
- (2008) Michael A Quail et al. NATURE METHODS
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