CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
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Title
CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
Authors
Keywords
False Discovery Rate, Read Length, Splice Signal, Short Exon, Linear Transcript
Journal
GENOME BIOLOGY
Volume 16, Issue 1, Pages 4
Publisher
Springer Nature
Online
2015-01-12
DOI
10.1186/s13059-014-0571-3
References
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Related references
Note: Only part of the references are listed.- Detecting and characterizing circular RNAs
- (2014) William R Jeck et al. NATURE BIOTECHNOLOGY
- Circular RNA Is Expressed across the Eukaryotic Tree of Life
- (2014) Peter L. Wang et al. PLoS One
- A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
- (2014) Steve Hoffmann et al. GENOME BIOLOGY
- Circular Intronic Long Noncoding RNAs
- (2013) Yang Zhang et al. MOLECULAR CELL
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
- (2013) Jing Wang et al. NUCLEIC ACIDS RESEARCH
- Cell-Type Specific Features of Circular RNA Expression
- (2013) Julia Salzman et al. PLoS Genetics
- Discovery of hundreds of mirtrons in mouse and human small RNA data
- (2012) E. Ladewig et al. GENOME RESEARCH
- Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
- (2012) Julia Salzman et al. PLoS One
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- Transcriptome-wide discovery of circular RNAs in Archaea
- (2011) Miri Danan et al. NUCLEIC ACIDS RESEARCH
- Critical association of ncRNA with introns
- (2010) David Rearick et al. NUCLEIC ACIDS RESEARCH
- Group I introns: Moving in new directions
- (2010) Henrik Nielsen et al. RNA Biology
- Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk
- (2010) Christin E. Burd et al. PLoS Genetics
- inGAP: an integrated next-generation genome analysis pipeline
- (2009) Ji Qi et al. BIOINFORMATICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
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