Microbial eco-evolutionary dynamics in the plant rhizosphere

Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient

(2021) Alexander B. Chase et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities

(2021) Beatriz Manriquez et al.   Frontiers in Microbiology

Genetic variation is associated with differences in facilitative and competitive interactions in the Rhizobium leguminosarum species complex

(2021) Bryden Fields et al.   ENVIRONMENTAL MICROBIOLOGY

Diversification of Bacillus subtilis during experimental evolution on A rabidopsis thaliana and the complementarity in root colonization of evolved subpopulations

(2021) Christopher Blake et al.   ENVIRONMENTAL MICROBIOLOGY

Integrating fundamental processes to understand eco‐evolutionary community dynamics and patterns

(2021) Lynn Govaert et al.   FUNCTIONAL ECOLOGY

Shoot and root insect herbivory change the plant rhizosphere microbiome and affects cabbage‐insect interactions through plant‐soil feedback

(2021) Julia Friman et al.   NEW PHYTOLOGIST

Experimental evolution can enhance benefits of rhizobia to novel legume hosts

(2021) Kenjiro W. Quides et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lipid exchanges drove the evolution of mutualism during plant terrestrialization

(2021) Mélanie K. Rich et al.   SCIENCE

From Microbial Dynamics to Functionality in the Rhizosphere: A Systematic Review of the Opportunities With Synthetic Microbial Communities

(2021) Olga Marín et al.   Frontiers in Plant Science

Indirect reduction of Ralstonia solanacearum via pathogen helper inhibition

(2021) Mei Li et al.   ISME Journal

Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

(2021) Jie Hu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

No selection for cheating in a natural meta‐population of rhizobia

(2020) Megan E. Frederickson   ECOLOGY LETTERS

Rapid evolution in plant–microbe interactions – an evolutionary genomics perspective

(2020) Sophie Vries et al.   NEW PHYTOLOGIST

An introduction to phylosymbiosis

(2020) Shen Jean Lim et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios

(2020) Lucas P. P. Braga et al.   Microbiome

Competition for iron drives phytopathogen control by natural rhizosphere microbiomes

(2020) Shaohua Gu et al.   Nature Microbiology

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community

(2020) Daniel Padfield et al.   ISME Journal

Lifestyle adaptations ofRhizobiumfrom rhizosphere to symbiosis

(2020) Rachel M. Wheatley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evolution makes microbes more cooperative with their local host genotype

(2020) Rebecca T. Batstone et al.   SCIENCE

Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato

(2020) Rekha Gopalan-Nair et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interspecific conflict and the evolution of ineffective rhizobia

(2019) Kelsey A. Gano‐Cohen et al.   ECOLOGY LETTERS

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

The Evolution and Ecology of Bacterial Warfare

(2019) Elisa T. Granato et al.   CURRENT BIOLOGY

A methodological framework to embrace soil biodiversity

(2019) Stefan Geisen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant Host-Associated Mechanisms for Microbial Selection

(2019) Piet Jones et al.   Frontiers in Plant Science

Phage combination therapies for bacterial wilt disease in tomato

(2019) Xiaofang Wang et al.   NATURE BIOTECHNOLOGY

Microbial inoculants: reviewing the past, discussing the present and previewing an outstanding future for the use of beneficial bacteria in agriculture

(2019) Mariana Sanches Santos et al.   AMB Express

Multifaceted Impacts of Bacteriophages in the Plant Microbiome

(2018) Britt Koskella et al.   Annual Review of Phytopathology

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

(2018) Eric C. H. Chen et al.   NEW PHYTOLOGIST

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic and Molecular Mechanisms Underlying Symbiotic Specificity in Legume-Rhizobium Interactions

(2018) Qi Wang et al.   Frontiers in Plant Science

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

A critique for eco-evolutionary dynamics

(2018) Andrew P. Hendry   FUNCTIONAL ECOLOGY

Analyzing eco‐evolutionary dynamics ‐ the challenging complexity of the real world

(2018) Luc De Meester et al.   FUNCTIONAL ECOLOGY

Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment

(2018) Marc W. Schmid et al.   MOLECULAR ECOLOGY

Plant Community Richness Mediates Inhibitory Interactions and Resource Competition between Streptomyces and Fusarium Populations in the Rhizosphere

(2017) Adil Essarioui et al.   MICROBIAL ECOLOGY

Changes in bacterial community composition and soil respiration indicate rapid successions of protist grazers during mineralization of maize crop residues

(2017) Maike Hünninghaus et al.   PEDOBIOLOGIA

Experimental evidence that parasites drive eco-evolutionary feedbacks

(2017) Franziska S. Brunner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotic Pseudomonas communities enhance plant growth and nutrient assimilation via diversity-mediated ecosystem functioning

(2017) Jie Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mutualisms Are Not on the Verge of Breakdown

(2017) Megan E. Frederickson   TRENDS IN ECOLOGY & EVOLUTION

Parasites and competitors suppress bacterial pathogen synergistically due to evolutionary trade-offs

(2016) Xiaofang Wang et al.   EVOLUTION

Pyrosequencing of rpoB uncovers a significant biogeographical pattern of rhizobial species in soybean rhizosphere

(2016) Xing Xing Zhang et al.   JOURNAL OF BIOGEOGRAPHY

Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community

(2016) Pedro Gómez et al.   Nature Communications

How Do Species Interactions Affect Evolutionary Dynamics Across Whole Communities?

(2015) Timothy G. Barraclough   Annual Review of Ecology Evolution and Systematics

Diversity patterns of R hizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes

(2015) Fabiola Miranda-Sánchez et al.   ENVIRONMENTAL MICROBIOLOGY

Relative importance of evolutionary dynamics depends on the composition of microbial predator–prey community

(2015) Ville-Petri Friman et al.   ISME Journal

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum

(2015) N. Kumar et al.   Open Biology

Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus

(2015) J. H. Burns et al.   AoB Plants

Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering

(2015) Liliana Quiza et al.   Frontiers in Plant Science

Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants

(2014) Alice Guidot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Dynamics of Nitrogen Fixation in the Legume–Rhizobia Symbiosis

(2014) Hironori Fujita et al.   PLoS One

Real-time microbial adaptive diversification in soil

(2013) Pedro Gómez et al.   ECOLOGY LETTERS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Species Interactions Alter Evolutionary Responses to a Novel Environment

(2012) Diane Lawrence et al.   PLOS BIOLOGY

Bacteria-Phage Antagonistic Coevolution in Soil

(2011) P. Gomez et al.   SCIENCE

Why intraspecific trait variation matters in community ecology

(2011) Daniel I. Bolnick et al.   TRENDS IN ECOLOGY & EVOLUTION

Eco‐Evolutionary Dynamics of Mutualists and Exploiters

(2009) Emily I. Jones et al.   AMERICAN NATURALIST

Protozoan-Induced Regulation of Cyclic Lipopeptide Biosynthesis Is an Effective Predation Defense Mechanism for Pseudomonas fluorescens

(2009) M. Mazzola et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Experimental evaluation of evolution and coevolution as agents of ecosystem change in Trinidadian streams

(2009) E. P. Palkovacs et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Secondary metabolite production facilitates establishment of rhizobacteria by reducing both protozoan predation and the competitive effects of indigenous bacteria

(2008) A. Jousset et al.   FUNCTIONAL ECOLOGY