Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants

The Utility of Fisher's Geometric Model in Evolutionary Genetics

(2014) O. Tenaillon   Annual Review of Ecology Evolution and Systematics

The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps

(2014) João Barroso-Batista et al.   PLoS Genetics

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex

(2013) Nemo Peeters et al.   BMC GENOMICS

Host immune responses accelerate pathogen evolution

(2013) Pankaj Trivedi et al.   ISME Journal

Ralstonia solanacearum, a widespread bacterial plant pathogen in the post-genomic era

(2013) Nemo Peeters et al.   MOLECULAR PLANT PATHOLOGY

Constraints on Genome Dynamics Revealed from Gene Distribution among the Ralstonia solanacearum Species

(2013) Pierre Lefeuvre et al.   PLoS One

Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators

(2013) Rasmus Lykke Marvig et al.   PLoS Genetics

Pathogenomics of theRalstonia solanacearumSpecies Complex

(2012) Stéphane Genin et al.   Annual Review of Phytopathology

As it happens: current directions in experimental evolution

(2012) T. Bataillon et al.   Biology Letters

Sequencing of K60, Type Strain of the Major Plant Pathogen Ralstonia solanacearum

(2012) B. Remenant et al.   JOURNAL OF BACTERIOLOGY

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

(2012) JEREMY R. DETTMAN et al.   MOLECULAR ECOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains

(2011) Adriana González et al.   ENVIRONMENTAL MICROBIOLOGY

Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA

(2011) Emmanuel Wicker et al.   ISME Journal

Complete Genome Sequence of the Plant Pathogen Ralstonia solanacearum Strain Po82

(2011) J. Xu et al.   JOURNAL OF BACTERIOLOGY

Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations

(2011) S. Bedhomme et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Chromosomal Insertion Toolbox for Promoter Probing, Mutant Complementation, and Pathogenicity Studies inRalstonia solanacearum

(2011) Freddy Monteiro et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles

(2011) Benoît Remenant et al.   PLoS One

West Nile Virus Experimental Evolution in vivo and the Trade-off Hypothesis

(2011) Eleanor R. Deardorff et al.   PLoS Pathogens

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

(2010) Benoît Remenant et al.   BMC GENOMICS

Diminishing Returns From Beneficial Mutations and Pervasive Epistasis Shape the Fitness Landscape for Rifampicin Resistance in Pseudomonas aeruginosa

(2010) R. C. MacLean et al.   GENETICS

Divergence Involving Global Regulatory Gene Mutations in an Escherichia coli Population Evolving under Phosphate Limitation

(2010) Lei Wang et al.   Genome Biology and Evolution

Gene functionality's influence on the second codon: A large-scale survey of second codon composition in three domains

(2010) Sen-Lin Tang et al.   GENOMICS

Next-generation sequencing as a tool to study microbial evolution

(2010) MICHAEL A. BROCKHURST et al.   MOLECULAR ECOLOGY

In planta conditions induce genomic changes in Pseudomonas syringae pv. phaseolicola

(2010) HELEN C. LOVELL et al.   MOLECULAR PLANT PATHOLOGY

A Competitive Index Assay Identifies SeveralRalstonia solanacearumType III Effector Mutant Strains with Reduced Fitness in Host Plants

(2010) Alberto P. Macho et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Evolutionary microbial genomics: insights into bacterial host adaptation

(2010) Christina Toft et al.   NATURE REVIEWS GENETICS

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum

(2010) Stéphane Genin   NEW PHYTOLOGIST

Experimental Evolution of a Plant Pathogen into a Legume Symbiont

(2010) Marta Marchetti et al.   PLOS BIOLOGY

Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli

(2009) Mark T Stanek et al.   BMC EVOLUTIONARY BIOLOGY

PrhG, a Transcriptional Regulator Responding to Growth Conditions, Is Involved in the Control of the Type III Secretion System Regulon in Ralstonia solanacearum

(2009) L. Plener et al.   JOURNAL OF BACTERIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Epidemiological evidence for the emergence of a new pathogenic variant ofRalstonia solanacearumin Martinique (French West Indies)

(2009) E. Wicker et al.   PLANT PATHOLOGY

Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations

(2009) Tom M Conrad et al.   GENOME BIOLOGY

Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

(2008) Chad Nusbaum et al.   NATURE METHODS