Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities

Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria

(2021) Jessika Consuegra et al.   Nature Communications

Population bottlenecks strongly influence the evolutionary trajectory to fluoroquinolone resistance in Escherichia coli

(2020) Linnéa Garoff et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial coexistence driven by motility and spatial competition

(2020) Sebastian Gude et al.   NATURE

Measuring Coevolutionary Dynamics in Species-Rich Communities

(2020) Alex R. Hall et al.   TRENDS IN ECOLOGY & EVOLUTION

Bacterial adaptation is constrained in complex communities

(2020) Thomas Scheuerl et al.   Nature Communications

Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere

(2020) Sébastien Renoud et al.   FEMS MICROBIOLOGY ECOLOGY

Understanding the evolution of interspecies interactions in microbial communities

(2020) Florien A. Gorter et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Toward a dynamical understanding of microbial communities

(2020) Paul B. Rainey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental Evolution of Legume Symbionts: What Have We Learnt?

(2020) Ginaini Grazielli Doin de Moura et al.   Genes

The Evolution of Mutualistic Dependence

(2020) Guillaume Chomicki et al.   Annual Review of Ecology Evolution and Systematics

Experimental (co)evolution in a multi‐species microbial community results in local maladaptation

(2020) Meaghan Castledine et al.   ECOLOGY LETTERS

Rapid evolution destabilizes species interactions in a fluctuating environment

(2020) Alejandra Rodríguez-Verdugo et al.   ISME Journal

Horizontal gene transfer potentiates adaptation by reducing selective constraints on the spread of genetic variation

(2020) Laura C. Woods et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evolution makes microbes more cooperative with their local host genotype

(2020) Rebecca T. Batstone et al.   SCIENCE

Coevolved mutualists experience fluctuating costs and benefits over time

(2020) Mayra C. Vidal et al.   EVOLUTION

Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato

(2020) Rekha Gopalan-Nair et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predator coevolution and prey trait variability determine species coexistence

(2019) Thomas Scheuerl et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rhizosphere size and shape: Temporal dynamics and spatial stationarity

(2019) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Public goods and cheating in microbes

(2019) Parker Smith et al.   CURRENT BIOLOGY

Microbial Experimental Evolution – a proving ground for evolutionary theory and a tool for discovery

(2019) Michael J McDonald   EMBO REPORTS

Toxicity drives facilitation between 4 bacterial species

(2019) Philippe Piccardi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial predator-prey coevolution accelerates genome evolution and selects on virulence-associated prey defences

(2019) Ramith R. Nair et al.   Nature Communications

Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

(2019) Norma M. Morella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of Plant-Associated Microbes in Mediating Host-Plant Selection by Insect Herbivores

(2019) John M. Grunseich et al.   Plants-Basel

Getting somewhere with the Red Queen: chasing a biologically modern definition of the hypothesis

(2018) Luke C. Strotz et al.   Biology Letters

Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies

(2018) Yoann Besset-Manzoni et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Differential Contribution of Plant-Beneficial Functions from Pseudomonas kilonensis F113 to Root System Architecture Alterations in Arabidopsis thaliana and Zea mays

(2018) Jordan Vacheron et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Emergence of evolutionary driving forces in pattern-forming microbial populations

(2018) Jona Kayser et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation of Escherichia coli to long-term batch culture in various rich media

(2018) Lacey L. Westphal et al.   RESEARCH IN MICROBIOLOGY

Secondary Metabolism and Interspecific Competition Affect Accumulation of Spontaneous Mutants in the GacS-GacA Regulatory System in Pseudomonas protegens

(2018) Qing Yan et al.   mBio

Modifying and reacting to the environmental pH can drive bacterial interactions

(2018) Christoph Ratzke et al.   PLOS BIOLOGY

Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution

(2018) Bram Van den Bergh et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Neutral and selective dynamics in a synthetic microbial community

(2018) Nate J. Cira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Construction and Characterization of Synthetic Bacterial Community for Experimental Ecology and Evolution

(2018) Johannes Cairns et al.   Frontiers in Genetics

Experimental evolution of a fungal pathogen into a gut symbiont

(2018) Gloria Hoi Wan Tso et al.   SCIENCE

Rhizosphere microorganisms can influence the timing of plant flowering

(2018) Tao Lu et al.   Microbiome

Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations

(2017) Richard E Lenski   ISME Journal

Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont

(2017) Delphine Capela et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptation of the pathogen, Pseudomonas syringae , during experimental evolution on a native vs. alternative host plant

(2017) Sean Meaden et al.   MOLECULAR ECOLOGY

Diversity spurs diversification in ecological communities

(2017) Vincent Calcagno et al.   Nature Communications

Quorum-quenching limits quorum-sensing exploitation by signal-negative invaders

(2017) Mélanie Tannières et al.   Scientific Reports

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption

(2017) Zheng Yu et al.   Frontiers in Microbiology

Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution

(2017) Karin E. Kram et al.   mSystems

Beyond the Black Queen Hypothesis

(2016) Alix Mas et al.   ISME Journal

Evolution by flight and fight: diverse mechanisms of adaptation by actively motile microbes

(2016) Olaya Rendueles et al.   ISME Journal

Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime

(2016) Marta Marchetti et al.   MOLECULAR ECOLOGY

Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut

(2016) Mathilde Lescat et al.   MOLECULAR ECOLOGY

The evolution of symbiont preference traits in the model legume Medicago truncatula

(2016) Rebecca T. Batstone et al.   NEW PHYTOLOGIST

Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere?

(2016) Marie-Lara Bouffaud et al.   Scientific Reports

Enhanced in planta Fitness through Adaptive Mutations in EfpR, a Dual Regulator of Virulence and Metabolic Functions in the Plant Pathogen Ralstonia solanacearum

(2016) Anthony Perrier et al.   PLoS Pathogens

High functional diversity stimulates diversification in experimental microbial communities

(2016) A. Jousset et al.   Science Advances

Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments

(2015) Elizabeth R Jerison et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

(2015) Susan F. Bailey et al.   MOLECULAR ECOLOGY

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

The rule of declining adaptability in microbial evolution experiments

(2015) Alejandro Couce et al.   Frontiers in Genetics

The Utility of Fisher's Geometric Model in Evolutionary Genetics

(2014) O. Tenaillon   Annual Review of Ecology Evolution and Systematics

The functional basis of adaptive evolution in chemostats

(2014) David Gresham et al.   FEMS MICROBIOLOGY REVIEWS

Experimental microbial evolution: history and conceptual underpinnings

(2014) Julian Adams et al.   GENOMICS

Evolution of species interactions determines microbial community productivity in new environments

(2014) Francesca Fiegna et al.   ISME Journal

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants

(2014) Alice Guidot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary limits to cooperation in microbial communities

(2014) Nuno M. Oliveira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient cross-feeding in the microbial world

(2014) Erica C. Seth et al.   Frontiers in Microbiology

Experimental evolution of nodule intracellular infection in legume symbionts

(2013) Su Hua Guan et al.   ISME Journal

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Founder niche constrains evolutionary adaptive radiation

(2013) R. C. E. Flohr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-Term Dynamics of Adaptation in Asexual Populations

(2013) M. J. Wiser et al.   SCIENCE

Experimental coevolution of species interactions

(2013) Michael A. Brockhurst et al.   TRENDS IN ECOLOGY & EVOLUTION

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Pathogenomics of theRalstonia solanacearumSpecies Complex

(2012) Stéphane Genin et al.   Annual Review of Phytopathology

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

How competition affects evolutionary rescue

(2012) M. M. Osmond et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

What limits the evolutionary emergence of pathogens?

(2012) S. Gandon et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental evolution of multicellularity

(2012) W. C. Ratcliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Species Interactions Alter Evolutionary Responses to a Novel Environment

(2012) Diane Lawrence et al.   PLOS BIOLOGY

Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations

(2011) Gregory I. Lang et al.   GENETICS

Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations

(2011) S. Bedhomme et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary dynamics of bacteria in a human host environment

(2011) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments

(2011) Florence Wisniewski-Dyé et al.   PLoS Genetics

ORIGINAL ARTICLE: Rapid evolution in a plant-pathogen interaction and the consequences for introduced host species

(2010) Gregory S. Gilbert et al.   Evolutionary Applications

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Evolutionary microbial genomics: insights into bacterial host adaptation

(2010) Christina Toft et al.   NATURE REVIEWS GENETICS

Rapid evolution of stability and productivity at the origin of a microbial mutualism

(2010) K. L. Hillesland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental Evolution of a Plant Pathogen into a Legume Symbiont

(2010) Marta Marchetti et al.   PLOS BIOLOGY

Adapt or disperse: understanding species persistence in a changing world

(2009) MATTY P. BERG et al.   GLOBAL CHANGE BIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Rules of Engagement: Interspecies Interactions that Regulate Microbial Communities

(2008) Ainslie E.F. Little et al.   Annual Review of Microbiology