Diversity patterns of R hizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

(2015) David VanInsberghe et al.   ISME Journal

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizobium–legume symbioses: the crucial role of plant immunity

(2015) Benjamin Gourion et al.   TRENDS IN PLANT SCIENCE

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity

(2015) Zachary T. Aanderud et al.   Frontiers in Microbiology

Pyrosequencing Reveals Changes in Soil Bacterial Communities after Conversion of Yungas Forests to Agriculture

(2015) Marcela S. Montecchia et al.   PLoS One

Nitrogen-Fixing Rhizobial Strains Isolated from Common Bean Seeds: Phylogeny, Physiology, and Genome Analysis

(2014) Yolanda Mora et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic basis of symbiovar mimosae in Rhizobium etli

(2014) Marco A Rogel et al.   BMC GENOMICS

Limits to robustness and reproducibility in the demarcation of operational taxonomic units

(2014) Thomas S. B. Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

Efficiency of partner choice and sanctions in Lotus is not altered by nitrogen fertilization

(2014) J. U. Regus et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

(2013) Alexander F. Koeppel et al.   NUCLEIC ACIDS RESEARCH

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species-rich clades

(2013)   TAXON

Microbial phylotype composition and diversity predicts plant productivity and plant-soil feedbacks

(2012) James D. Bever et al.   ECOLOGY LETTERS

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides

(2012) S. D. Brown et al.   JOURNAL OF BACTERIOLOGY

Rhizobium etli taxonomy revised with novel genomic data and analyses

(2012) Martha G. López-Guerrero et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

A comparative study of ecological specialization estimators

(2012) Timothée Poisot et al.   Methods in Ecology and Evolution

Negotiation, Sanctions, and Context Dependency in the Legume-Rhizobium Mutualism

(2011) Erol Akçay et al.   AMERICAN NATURALIST

Intra and inter-annual variation in seed rain in a secondary dry tropical forest excluded from chronic disturbance

(2011) Cristina Martínez-Garza et al.   FOREST ECOLOGY AND MANAGEMENT

Reclassification of Rhizobium tropici type A strains as Rhizobium leucaenae sp. nov.

(2011) R. A. Ribeiro et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Symbiotic Effectiveness of Rhizobial Mutualists Varies in Interactions with Native Australian Legume Genera

(2011) Peter H. Thrall et al.   PLoS One

Symbiovars in rhizobia reflect bacterial adaptation to legumes

(2011) Marco A. Rogel et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Host control over infection and proliferation of a cheater symbiont

(2010) J. L. SACHS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

A C Subunit of the Plant Nuclear Factor NF-Y Required for Rhizobial Infection and Nodule Development Affects Partner Selection in the Common Bean–Rhizobium etliSymbiosis

(2010) María Eugenia Zanetti et al.   PLANT CELL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus

(2010) Lene H. Madsen et al.   Nature Communications

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Woody Plant Diversity, Evolution, and Ecology in the Tropics: Perspectives from Seasonally Dry Tropical Forests

(2009) R. Toby Pennington et al.   Annual Review of Ecology Evolution and Systematics

In Situ Phylogenetic Structure and Diversity of Wild Bradyrhizobium Communities

(2009) J. L. Sachs et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

An experimental and modelling exploration of the host-sanction hypothesis in legume–rhizobia mutualism

(2009) Diana E. Marco et al.   JOURNAL OF THEORETICAL BIOLOGY

primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies

(2009) B. Contreras-Moreira et al.   NUCLEIC ACIDS RESEARCH

Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?

(2009) Catherine Masson-Boivin et al.   TRENDS IN MICROBIOLOGY

Sanctions, Cooperation, and the Stability of Plant-Rhizosphere Mutualisms

(2008) E. Toby Kiers et al.   Annual Review of Ecology Evolution and Systematics

Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere

(2008) M. S. Elshahed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the Asiatic Continent

(2008) P. Vinuesa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In vivo expression technology (IVET) selection of genes of Rhizobium leguminosarum biovar viciae A34 expressed in the rhizosphere

(2008) Michelle Barr et al.   FEMS MICROBIOLOGY LETTERS

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

(2008) Stephen J Bent et al.   ISME Journal