An introduction to phylosymbiosis

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

(2020) Se Jin Song et al.   mBio

Modularity and predicted functions of the global sponge-microbiome network

(2019) Miguel Lurgi et al.   Nature Communications

Characterization and comparison of gut microbiomes in nine species of parrots in captivity

(2019) Hongyi Liu et al.   SYMBIOSIS

Unveiled feather microcosm: feather microbiota of passerine birds is closely associated with host species identity and bacteriocin-producing bacteria

(2019) Veronika Gvoždíková Javůrková et al.   ISME Journal

Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species

(2019) Laura E. Grieneisen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The skin microbiome of vertebrates

(2019) Ashley A. Ross et al.   Microbiome

Phylosymbiosis Impacts Adaptive Traits in Nasonia Wasps

(2019) Edward J. van Opstal et al.   mBio

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

(2019) Seth M. Rudman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Analysis of Intestine Microbiota of Four Wild Waterbird Species

(2019) Sivan Laviad-Shitrit et al.   Frontiers in Microbiology

No evidence for phylosymbiosis in western chipmunk species

(2019) Kirsten Grond et al.   FEMS MICROBIOLOGY ECOLOGY

Evidence for host effect on the intestinal microbiota of whitefish ( Coregonus sp.) species pairs and their hybrids

(2019) Maelle Sevellec et al.   Ecology and Evolution

Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome

(2019) Holly L. Lutz et al.   mSystems

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

(2018) Katherine R. Amato et al.   ISME Journal

Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure

(2018) Sonya Erlandson et al.   MOLECULAR ECOLOGY

Functional variation in the gut microbiome of wild Drosophila populations

(2018) Alyssa Bost et al.   MOLECULAR ECOLOGY

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia

(2018) Ashley A. Ross et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota

(2018) Christopher A. Gaulke et al.   mBio

Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet

(2018) Marlène Chiarello et al.   Microbiome

Transgenerational developmental effects of species-specific, maternally transmitted microbiota in Onthophagus dung beetles

(2018) Erik S. Parker et al.   ECOLOGICAL ENTOMOLOGY

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Finer-Scale Phylosymbiosis: Insights from Insect Viromes

(2018) Brittany A. Leigh et al.   mSystems

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?

(2018) Florent Mazel et al.   mSystems

Sympatric kelp species share a large portion of their surface bacterial communities

(2017) Matthew A. Lemay et al.   ENVIRONMENTAL MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Gut microbial communities of American pikas (Ochotona princeps ): Evidence for phylosymbiosis and adaptations to novel diets

(2017) Kevin D. Kohl et al.   JOURNAL OF ANIMAL ECOLOGY

Codiversification of gastrointestinal microbiota and phylogeny in passerines is not explained by ecological divergence

(2017) Lucie Kropáčková et al.   MOLECULAR ECOLOGY

Microbial communities exhibit host species distinguishability and phylosymbiosis along the length of the gastrointestinal tract

(2017) Kevin D. Kohl et al.   MOLECULAR ECOLOGY

Dispersal limitation promotes the diversification of the mammalian gut microbiota

(2017) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus

(2017) Eva Novakova et al.   Frontiers in Microbiology

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar

(2017) Molly C. Bletz et al.   Frontiers in Microbiology

Dynamic microbiome evolution in social bees

(2017) Waldan K. Kwong et al.   Science Advances

Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees

(2016) J. B. Vincent et al.   MOLECULAR ECOLOGY

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

Open-Source Sequence Clustering Methods Improve the State Of the Art

(2016) Evguenia Kopylova et al.   mSystems

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

(2016) Kevin R. Theis et al.   mSystems

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome

(2015) Jun Wang et al.   Nature Communications

Comparative Gut Microbiota of 59 Neotropical Bird Species

(2015) Sarah M. Hird et al.   Frontiers in Microbiology

The Cockroach Origin of the Termite Gut Microbiota: Patterns in Bacterial Community Structure Reflect Major Evolutionary Events

(2014) Carsten Dietrich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Conducting a Microbiome Study

(2014) Julia K. Goodrich et al.   CELL

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges

(2014) Cole G. Easson et al.   Frontiers in Microbiology

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

On a matching distance between rooted phylogenetic trees

(2013) Damian Bogdanowicz et al.   International Journal of Applied Mathematics and Computer Science

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis

(2013) Adam C-N Wong et al.   ISME Journal

Determinants of root-associated fungal communities within Asteraceae in a semi-arid grassland

(2013) Jeannine Wehner et al.   JOURNAL OF ECOLOGY

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

(2013) Jon G. Sanders et al.   MOLECULAR ECOLOGY

Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis

(2013) Leho Tedersoo et al.   NEW PHYTOLOGIST

Edge Principal Components and Squash Clustering: Using the Special Structure of Phylogenetic Placement Data for Sample Comparison

(2013) Frederick A. Matsen IV et al.   PLoS One

Relationships between Host Phylogeny, Host Type and Bacterial Community Diversity in Cold-Water Coral Reef Sponges

(2013) Sandra Schöttner et al.   PLoS One

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Do diet and taxonomy influence insect gut bacterial communities?

(2012) D. R. Colman et al.   MOLECULAR ECOLOGY

Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography

(2012) CALEB D. PHILLIPS et al.   MOLECULAR ECOLOGY

Generalized linear mixed models for phylogenetic analyses of community structure

(2011) Anthony R. Ives et al.   ECOLOGICAL MONOGRAPHS

THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES

(2011) Robert M. Brucker et al.   EVOLUTION

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Is diversification history of maize influencing selection of soil bacteria by roots?

(2011) MARIE-LARA BOUFFAUD et al.   MOLECULAR ECOLOGY

Symbiont genomics, our new tangled bank

(2010) M. Medina et al.   GENOMICS

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

(2010) Howard Ochman et al.   PLOS BIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE