Phylum Gemmatimonadota and Its Role in the Environment

Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes

(2021) Yonghui Zeng et al.   Frontiers in Microbiology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes

(2021) Izabela Mujakić et al.   mSystems

The benefits of autotrophic nitrogen removal from high concentration of urea wastewater through a process of urea hydrolysis and partial nitritation in sequencing batch reactor

(2021) Yongxing Chen et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

(2021) Donovan H Parks et al.   NUCLEIC ACIDS RESEARCH

Structure elucidation of the novel carotenoid gemmatoxanthin from the photosynthetic complex of Gemmatimonas phototrophica AP64

(2021) Nupur et al.   Scientific Reports

Revealing the dissimilar structure of microbial communities in different WWTPs that treat fish-canning wastewater with different NaCl content

(2021) David Correa-Galeote et al.   Journal of Water Process Engineering

Diversity of sediment bacterial communities in the South Eastern Arabian Sea

(2020) P.V. Vipindas et al.   Regional Studies in Marine Science

Performance and mechanism of urea hydrolysis in partial nitritation system based on SBR

(2020) Haolin Hu et al.   CHEMOSPHERE

Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches

(2020) Rulong Liu et al.   Frontiers in Microbiology

Disentangling the role of salinity-sodicity in shaping soil microbiome along a natural saline-sodic gradient

(2020) Yupeng Guan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of Continuous Nitrogen Fertilizer Application on the Diversity and Composition of Rhizosphere Soil Bacteria

(2020) Ning Ren et al.   Frontiers in Microbiology

Utilization of light energy in phototrophic Gemmatimonadetes

(2020) Michal Koblížek et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Vegetation richness, species identity and soil nutrients drive the shifts in soil bacterial communities during restoration process

(2020) Meiling Liu et al.   Environmental Microbiology Reports

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches

(2019) Logan M. Peoples et al.   Frontiers in Microbiology

Thinking twice about the evolution of photosynthesis

(2019) Tanai Cardona   Open Biology

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

(2019) Kerrin Mendler et al.   NUCLEIC ACIDS RESEARCH

Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep

(2019) Guojie Cui et al.   PeerJ

Seasonal development of a coastal microbial mat

(2019) Daniela Clara Cardoso et al.   Scientific Reports

Evolutionary Implications of Anoxygenic Phototrophy in the Bacterial Phylum Candidatus Eremiobacterota (WPS-2)

(2019) Lewis M. Ward et al.   Frontiers in Microbiology

Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake

(2019) Charlotte D. Vavourakis et al.   BMC BIOLOGY

Consumption of N2O and other N-cycle intermediates by Gemmatimonas aurantiaca strain T-27

(2019) Joanne Chee-Sanford et al.   MICROBIOLOGY-SGM

Variations of soil microbial communities accompanied by different vegetation restoration in an open-cut iron mining area

(2019) Jiaojiao Deng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Selective enrichment of bacterial pathogens by microplastic biofilm

(2019) Xiaojian Wu et al.   WATER RESEARCH

A shared core microbiome in soda lakes separated by large distances

(2019) Jackie K. Zorz et al.   Nature Communications

Biogeographical distribution of bacterial communities in saline agricultural soil

(2019) Shuai Zhao et al.   GEODERMA

Diel changes and diversity of pufM expression in freshwater communities of anoxygenic phototrophic bacteria

(2019) Lívia Kolesár Fecskeová et al.   Scientific Reports

Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes

(2018) Javier Pascual et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS)

(2018) Kasia Piwosz et al.   ISME Journal

Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae

(2018) Henner Brinkmann et al.   ISME Journal

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench

(2018) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Responses of soil total microbial biomass and community compositions to rainfall reductions

(2018) Chengjie Ren et al.   SOIL BIOLOGY & BIOCHEMISTRY

Variations of Bacterial Community Diversity Within the Rhizosphere of Three Phylogenetically Related Perennial Shrub Plant Species Across Environmental Gradients

(2018) Xiaofan Na et al.   Frontiers in Microbiology

Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes

(2018) Vasim Ahmed et al.   Frontiers in Microbiology

Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer

(2018) Lewis M. Ward et al.   Frontiers in Microbiology

Study on the bacterial and archaeal community structure and diversity of activated sludge from three wastewater treatment plants

(2018) Hui Qin et al.   MARINE POLLUTION BULLETIN

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

(2018) Charlotte D. Vavourakis et al.   Microbiome

Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization

(2017) Beate M Slaby et al.   ISME Journal

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary

(2017) Marcin Gołębiewski et al.   Environmental Microbiology Reports

Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica

(2017) Marko Dachev et al.   PLOS BIOLOGY

The Effect of Increased Loads of Dissolved Organic Matter on Estuarine Microbial Community Composition and Function

(2017) Sachia J. Traving et al.   Frontiers in Microbiology

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome

(2017) Julia W. Neilson et al.   mSystems

Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA)

(2017) Jessica M. Morrison et al.   PLoS One

Comparative analysis of bacterial community structure in the rhizosphere of maize by high-throughput pyrosequencing

(2017) Yi Yang et al.   PLoS One

Impacts of aquaculture wastewater irrigation on soil microbial functional diversity and community structure in arid regions

(2017) Lijuan Chen et al.   Scientific Reports

NovelacsFGene Primers Revealed a Diverse Phototrophic Bacterial Population, Including Gemmatimonadetes, in Lake Taihu (China)

(2016) Yili Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial communities inhabiting toxic industrial wastewater generated during nitrocellulose production

(2016) Elvira E. Ziganshina et al.   BIOLOGIA

Bacterial diversity and distribution in seven different estuarine sediments of Poyang Lake, China

(2016) Ping Sheng et al.   Environmental Earth Sciences

Longimicrobium terrae gen. nov., sp. nov., an oligotrophic bacterium of the under-represented phylum Gemmatimonadetes isolated through a system of miniaturized diffusion chambers

(2016) Javier Pascual et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Origin of Bacteriochlorophyll a and the Early Diversification of Photosynthesis

(2016) Tanai Cardona   PLoS One

Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments

(2016) Yonghui Zeng et al.   Environmental Microbiology Reports

Microbial Community Structure in the Rhizosphere of Rice Plants

(2016) Björn Breidenbach et al.   Frontiers in Microbiology

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea

(2016) Yue O. O. Hu et al.   Frontiers in Microbiology

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge

(2016) Likui Zhang et al.   Scientific Reports

Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca

(2015) Yonghui Zeng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge

(2015) Teresa Cerqueira et al.   Marine Genomics

Prokaryotic Community in Lacustrine Sediments of Byers Peninsula (Livingston Island, Maritime Antarctica)

(2015) Concetta Gugliandolo et al.   MICROBIAL ECOLOGY

Microbial diversity in the deep-sea sediments of Iheya North and Iheya Ridge, Okinawa Trough

(2015) Jian Zhang et al.   MICROBIOLOGICAL RESEARCH

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Molecular characterization of bacteria from permafrost of the Taylor Valley, Antarctica

(2014) Corien Bakermans et al.   FEMS MICROBIOLOGY ECOLOGY

Spatial distribution of bacterial communities in high-altitude freshwater wetland sediment

(2014) Yong Liu et al.   LIMNOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence of a Putative Deep Sea Specific Microbiome in Marine Sponges

(2014) Jonathan Kennedy et al.   PLoS One

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

(2014) Y. Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution and Origin of Oxygen-Dependent and Oxygen-Independent Forms of Mg-Protoporphyrin Monomethylester Cyclase among Phototrophic Proteobacteria

(2013) Ekaterina N. Boldareva-Nuianzina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial succession in Antarctic soils of two glacier forefields on Larsemann Hills, East Antarctica

(2013) Felizitas Bajerski et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial genome replication at subzero temperatures in permafrost

(2013) Steven J Tuorto et al.   ISME Journal

Gemmatirosa kalamazoonesis gen. nov., sp. nov., a member of the rarely-cultivated bacterial phylum Gemmatimonadetes

(2013) Jennifer M. DeBruyn et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Characteristics of Microbial Communities in Crustal Fluids in a Deep-Sea Hydrothermal Field of the Suiyo Seamount

(2013) Shingo Kato et al.   Frontiers in Microbiology

Chlorophyll Biosynthesis Gene Evolution Indicates Photosystem Gene Duplication, Not Photosystem Merger, at the Origin of Oxygenic Photosynthesis

(2012) Filipa L. Sousa et al.   Genome Biology and Evolution

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

Sponge-Associated Bacteria Are Strictly Maintained in Two Closely Related but Geographically Distant Sponge Hosts

(2011) Naomi F. Montalvo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial diversity and stratification of South Pacific abyssal marine sediments

(2011) Alan M. Durbin et al.   ENVIRONMENTAL MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Bacterial communities in sediments of the shallow Lake Dongping in China

(2011) H. Song et al.   JOURNAL OF APPLIED MICROBIOLOGY

Community Structure of Bacteria Associated withMicrocystisColonies from Cyanobacterial Blooms

(2011) Limei Shia et al.   JOURNAL OF FRESHWATER ECOLOGY

Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany)

(2011) Kerstin Röske et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure

(2010) Ivana Gudelj et al.   ECOLOGY LETTERS

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

(2010) Janine Kamke et al.   ISME Journal

On the rocks: the microbiology of Antarctic Dry Valley soils

(2010) S. Craig Cary et al.   NATURE REVIEWS MICROBIOLOGY

BchY-Based Degenerate Primers Target All Types of Anoxygenic Photosynthetic Bacteria in a Single PCR

(2009) N. Yutin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu

(2009) Wenjin Ye et al.   FEMS MICROBIOLOGY ECOLOGY

Architectural differentiation reflects bacterial community structure in stream biofilms

(2009) Katharina Besemer et al.   ISME Journal

Carotenoids of Gemmatimonas aurantiaca (Gemmatimonadetes): identification of a novel carotenoid, deoxyoscillol 2-rhamnoside, and proposed biosynthetic pathway of oscillol 2,2'-dirhamnoside

(2009) S. Takaichi et al.   MICROBIOLOGY-SGM

Characterization of a Bacterial Community in an Abandoned Semiarid Lead-Zinc Mine Tailing Site

(2008) M. O. Mendez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microarray analysis of bacterial diversity and distribution in aggregates from a desert agricultural soil

(2008) Jong-Shik Kim et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial community composition in soils of Northern Victoria Land, Antarctica

(2008) Thomas D. Niederberger et al.   ENVIRONMENTAL MICROBIOLOGY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY