Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary

Seasonal dynamics and activity of typical freshwater bacteria in brackish waters of the Gulf of Gdańsk

(2016) Kasia Piwosz et al.   LIMNOLOGY AND OCEANOGRAPHY

Alkalimicrobium pacificum gen. nov., sp. nov., a marine bacterium in the family Rhodobacteraceae

(2015) Gaiyun Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities

(2015) Markus V. Lindh et al.   Frontiers in Microbiology

Confluentimicrobium lipolyticum gen. nov., sp. nov., a novel lipolytic alphaproteobacterium isolated from the junction between the ocean and a freshwater spring, and emended description of Actibacterium mucosum Lucena et al. 2012

(2014) Sooyeon Park et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Bacterial community structure influenced by Coscinodiscus sp. in the Vistula river plume**This research was carried out with the support of a grant from the Polish Ministry of Science and Higher Education (No. NN304 025334) and statutory activities of the Department of Fisheries Oceanography and Marine Ecology of the National Marine Fisheries Research Institute (project P1-2).

(2014) Anetta Ameryk et al.   OCEANOLOGIA

The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics

(2014) Federico M. Ibarbalz et al.   PLoS One

Multilocus Sequence Analysis for the Assessment of Phylogenetic Diversity and Biogeography in Hyphomonas Bacteria from Diverse Marine Environments

(2014) Chongping Li et al.   PLoS One

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Impact of the inflow of Vistula river waters on the pelagic zone in the Gulf of Gdańsk**The study was supported by the Polish Ministry of Science and Higher Education as statutory activities of the Department of Fisheries Oceanography and Marine Ecology of the National Marine Fisheries Research Institute (project O-147) and statutory activities of the Department of Ecology of the Pomeranian University in Slupsk (project 11.6.13). This study was also supported by the Polish Ministry of Science and Higher Education project N N304 025334.

(2013) Magdalena Wielgat-Rychert et al.   OCEANOLOGIA

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Sphingobium limneticum sp. nov. and Sphingobium boeckii sp. nov., two freshwater planktonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov.

(2012) H. Chen et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition

(2012) B. Ryall et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

Comparative Molecular Microbial Ecology of the Spring Haptophyte Bloom in a Greenland Arctic Oligosaline Lake

(2012) Susanna Theroux et al.   Frontiers in Microbiology

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Differences in emission of nitrogen and phosphorus into the Vistula and Oder basins in 1995–2008 — Natural and anthropogenic causes (MONERIS model)

(2011) Tomasz Kowalkowski et al.   JOURNAL OF MARINE SYSTEMS

Protistan diversity does peak in the horohalinicum of the Baltic Sea: Reply to Ptacnik et al. (2011)

(2011) IV Telesh et al.   MARINE ECOLOGY PROGRESS SERIES

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Revisiting Remane’s concept: evidence for high plankton diversity and a protistan species maximum in the horohalinicum of the Baltic Sea

(2010) IV Telesh et al.   MARINE ECOLOGY PROGRESS SERIES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11)

(2009) R. Logares et al.   MOLECULAR BIOLOGY AND EVOLUTION

Infrequent marine–freshwater transitions in the microbial world

(2009) Ramiro Logares et al.   TRENDS IN MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE