Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake

Evaluation of DESS as a storage medium for microbial community analysis

(2019) Kevin M. Lee et al.   PeerJ

Effect of salinity on diazotrophic activity and microbial composition of phototrophic communities from Bitter-1 soda lake (Kulunda Steppe, Russia)

(2018) Zorigto Namsaraev et al.   EXTREMOPHILES

A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds

(2018) Tobias Koch et al.   ISME Journal

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

(2018) Karthik Anantharaman et al.   ISME Journal

A second RNA-binding protein is essential for ethanol tolerance provided by the bacterial OLE ribonucleoprotein complex

(2018) Kimberly A. Harris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

(2018) Xiaobo Liu et al.   Microbiome

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

(2018) Charlotte D. Vavourakis et al.   Microbiome

Sulfur Respiration in a Group of Facultatively Anaerobic Natronoarchaea Ubiquitous in Hypersaline Soda Lakes

(2018) Dimitry Y. Sorokin et al.   Frontiers in Microbiology

Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments

(2018) Peer H. A. Timmers et al.   Frontiers in Microbiology

Genomic Analysis of the Evolution of Phototrophy among Haloalkaliphilic Rhodobacterales

(2017) Karel Kopejtka et al.   Genome Biology and Evolution

An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nitrincola alkalilacustris sp. nov. and Nitrincola schmidtii sp. nov., alkaliphilic bacteria isolated from soda pans, and emended description of the genus Nitrincola

(2017) Andrea K. Borsodi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA

(2017) Christian F Edwardson et al.   ISME Journal

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents

(2017) Dimitri V Meier et al.   ISME Journal

Superhydrophobic diving flies (Ephydra hians) and the hypersaline waters of Mono Lake

(2017) Floris van Breugel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

(2017) Kenneth Wasmund et al.   Environmental Microbiology Reports

Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate

(2017) Casper Thorup et al.   mBio

Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica

(2017) Marko Dachev et al.   PLOS BIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

(2016) Emily Denise Melton et al.   Standards in Genomic Sciences

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

(2016) Charlotte D. Vavourakis et al.   Frontiers in Microbiology

Nitrogen fixation in a chemoautotrophic lucinid symbiosis

(2016) Sten König et al.   Nature Microbiology

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Functional microbiology of soda lakes

(2015) Dimitry Y Sorokin et al.   CURRENT OPINION IN MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Thiosulfate Dehydrogenase (TsdA) fromAllochromatium vinosum

(2015) José A. Brito et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome

(2015) Vímac Nolla-Ardèvol et al.   Frontiers in Microbiology

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Microbial diversity and biogeochemical cycling in soda lakes

(2014) Dimitry Y. Sorokin et al.   EXTREMOPHILES

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Algo-bacterial communities of the Kulunda steppe (Altai Region, Russia) Soda Lakes

(2014) O. S. Samylina et al.   MICROBIOLOGY

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

(2014) Y. Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disproportionation of elemental sulfur by haloalkaliphilic bacteria from soda lakes

(2013) Alexander Poser et al.   EXTREMOPHILES

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Thiosulfate dehydrogenase: a widespread unusual acidophilicc-type cytochrome

(2012) Kevin Denkmann et al.   ENVIRONMENTAL MICROBIOLOGY

Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes usingsoxB as a functional molecular marker

(2012) Tatjana P. Tourova et al.   FEMS MICROBIOLOGY ECOLOGY

Identification and characterization of a bacterial hydrosulphide ion channel

(2012) Bryan K. Czyzewski et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microfossils of sulphur-metabolizing cells in 3.4-billion-year-old rocks of Western Australia

(2011) David Wacey et al.   Nature Geoscience

A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea

(2011) Inês A. Cardoso Pereira et al.   Frontiers in Microbiology

The Microbial Sulfur Cycle at Extremely Haloalkaline Conditions of Soda Lakes

(2011) Dimitry Y. Sorokin et al.   Frontiers in Microbiology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Sulfidogenesis under extremely haloalkaline conditions in soda lakes of Kulunda Steppe (Altai, Russia)

(2010) Dimitry Y. Sorokin et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2

(2009) J. L. Burns et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural and Functional Insights into Sulfide:Quinone Oxidoreductase,

(2009) José A. Brito et al.   BIOCHEMISTRY

Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs

(2009) E. Chernousova et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nitriliruptor alkaliphilus gen. nov., sp. nov., a deep-lineage haloalkaliphilic actinobacterium from soda lakes capable of growth on aliphatic nitriles, and proposal of Nitriliruptoraceae fam. nov. and Nitriliruptorales ord. nov.

(2009) D. Yu. Sorokin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Hydrothermal vents and the origin of life

(2008) William Martin et al.   NATURE REVIEWS MICROBIOLOGY