Evolutionary Implications of Anoxygenic Phototrophy in the Bacterial Phylum Candidatus Eremiobacterota (WPS-2)

The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time

(2019) Lewis M. Ward et al.   FREE RADICAL BIOLOGY AND MEDICINE

Diversity of Chlorophototrophic Bacteria Revealed in the Omics Era

(2018) Vera Thiel et al.   Annual Review of Plant Biology

MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes

(2018) Lewis M Ward et al.   BIOINFORMATICS

Novel bacterial lineages associated with boreal moss species

(2018) Hannah Holland-Moritz et al.   ENVIRONMENTAL MICROBIOLOGY

Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae

(2018) Henner Brinkmann et al.   ISME Journal

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

(2018) F. Lemoine et al.   NATURE

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

The importance of designating type material for uncultured taxa

(2018) Maria Chuvochina et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Cryo-EM structure of the RC-LH core complex from an early branching photosynthetic prokaryote

(2018) Yueyong Xin et al.   Nature Communications

Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer

(2018) Lewis M. Ward et al.   Frontiers in Microbiology

Structure of photosynthetic LH1–RC supercomplex at 1.9 Å resolution

(2018) Long-Jiang Yu et al.   NATURE

Genome-centric view of carbon processing in thawing permafrost

(2018) Ben J. Woodcroft et al.   NATURE

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Early Archean origin of Photosystem II

(2018) Tanai Cardona et al.   Geobiology

Primary Productivity was Limited by Electron Donors Prior to the Advent of Oxygenic Photosynthesis

(2018) Lewis M. Ward et al.   Journal of Geophysical Research-Biogeosciences

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Atmospheric trace gases support primary production in Antarctic desert surface soil

(2017) Mukan Ji et al.   NATURE

Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi

(2017) Patrick M. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and characterization of aerobic anoxygenic phototrophs from exposed soils from the Sør Rondane Mountains, East Antarctica

(2017) Guillaume Tahon et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Evolution of Oxygenic Photosynthesis

(2016) Woodward W. Fischer et al.   Annual Review of Earth and Planetary Sciences

Crown group Oxyphotobacteria postdate the rise of oxygen

(2016) P. M. Shih et al.   Geobiology

Gene Sequencing-Based Analysis of Microbial-Mat Morphotypes, Caicos Platform, British West Indies

(2016) Elizabeth Trembath-Reichert et al.   JOURNAL OF SEDIMENTARY RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Metagenomic evidence for the presence of phototrophic Gemmatimonadetes bacteria in diverse environments

(2016) Yonghui Zeng et al.   Environmental Microbiology Reports

Biochemical characterization of predicted Precambrian RuBisCO

(2016) Patrick M. Shih et al.   Nature Communications

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

The core microbiome bonds the Alpine bog vegetation to a transkingdom metacommunity

(2015) Anastasia Bragina et al.   MOLECULAR ECOLOGY

Microbial diversity at Mitchell Peninsula, Eastern Antarctica: a potential biodiversity “hotspot”

(2015) Mukan Ji et al.   POLAR BIOLOGY

Different bulk and active bacterial communities in cryoconite from the margin and interior of the Greenland ice sheet

(2015) Marek Stibal et al.   Environmental Microbiology Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A fresh look at the evolution and diversification of photochemical reaction centers

(2014) Tanai Cardona   PHOTOSYNTHESIS RESEARCH

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

(2014) Y. Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania

(2014) Ryan Trexler et al.   Frontiers in Microbiology

Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage

(2014) Justin S. Brantner et al.   Frontiers in Microbiology

Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions

(2014) Anuj Camanocha et al.   Journal of Oral Microbiology

The Paint Pots, Kootenay National Park, Canada — a natural acid spring analogue for Mars

(2013) Stephen E. Grasby et al.   CANADIAN JOURNAL OF EARTH SCIENCES

Pyrosequencing-Based Assessment of the Bacteria Diversity in Surface and Subsurface Peat Layers of a Northern Wetland, with Focus on Poorly Studied Phyla and Candidate Divisions

(2013) Yulia M. Serkebaeva et al.   PLoS One

Chlorophyll Biosynthesis Gene Evolution Indicates Photosystem Gene Duplication, Not Photosystem Merger, at the Origin of Oxygenic Photosynthesis

(2012) Filipa L. Sousa et al.   Genome Biology and Evolution

Bacterial anoxygenic photosynthesis on plant leaf surfaces

(2012) Nof Atamna-Ismaeel et al.   Environmental Microbiology Reports

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential

(2011) Christian G Klatt et al.   ISME Journal

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Ultrastructural Analysis and Identification of Envelope Proteins of "Candidatus Chloracidobacterium thermophilum" Chlorosomes

(2011) A. M. Garcia Costas et al.   JOURNAL OF BACTERIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Adaptation of aerobic respiration to low O2 environments

(2011) H. Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Kinetics and energetics of electron transfer in reaction centers of the photosynthetic bacterium Roseiflexus castenholzii

(2010) Aaron M. Collins et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war

(2010) Iain C. Sutcliffe   ENVIRONMENTAL MICROBIOLOGY

Draft Genome Sequence of the Anoxygenic Filamentous Phototrophic Bacterium Oscillochloris trichoides subsp. DG-6

(2010) B. B. Kuznetsov et al.   JOURNAL OF BACTERIOLOGY

Light-Induced Structural Changes in a Photosynthetic Reaction Center Caught by Laue Diffraction

(2010) A. B. Wohri et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A phylum level perspective on bacterial cell envelope architecture

(2010) Iain C. Sutcliffe   TRENDS IN MICROBIOLOGY

Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments

(2009) JA Raven   AQUATIC MICROBIAL ECOLOGY

The petite purple photosynthetic powerpack

(2009) Michael R. Jones   BIOCHEMICAL SOCIETY TRANSACTIONS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Heterotrophic and Autotrophic Microbial Populations in Cold Perennial Springs of the High Arctic

(2008) N. N. Perreault et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY