Evidence of a Putative Deep Sea Specific Microbiome in Marine Sponges

Bacterial symbionts ofBathymodiolusmussels andEscarpiatubeworms from Chapopote, an asphalt seep in the southern Gulf of Mexico

(2012) L. Raggi et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community profiles in low microbial abundance sponges

(2012) Emily C. Giles et al.   FEMS MICROBIOLOGY ECOLOGY

Deep Sequencing of Myxilla (Ectyomyxilla) methanophila, an Epibiotic Sponge on Cold-Seep Tubeworms, Reveals Methylotrophic, Thiotrophic, and Putative Hydrocarbon-Degrading Microbial Associations

(2012) Shawn M. Arellano et al.   MICROBIAL ECOLOGY

Pyrosequencing Reveals Diverse and Distinct Sponge-Specific Microbial Communities in Sponges from a Single Geographical Location in Irish Waters

(2012) Stephen A. Jackson et al.   MICROBIAL ECOLOGY

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

(2012) James R. White et al.   PLoS One

Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis

(2012) Amaro E. Trindade-Silva et al.   PLoS One

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

(2011) Rachel L. Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges

(2011) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Chloroflexi bacteria are more diverse, abundant, and similar in high than in low microbial abundance sponges

(2011) Susanne Schmitt et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Deep sequencing reveals diversity and community structure of complex microbiota in five Mediterranean sponges

(2011) Susanne Schmitt et al.   HYDROBIOLOGIA

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Diversity and antimicrobial activities of microbes from two Irish marine sponges, Suberites carnosus and Leucosolenia sp.

(2011) B. Flemer et al.   JOURNAL OF APPLIED MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat

(2010) Félix Muller et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Comparison of the anaerobic microbiota of deep-water Geodia spp. and sandy sediments in the Straits of Florida

(2010) Wolfram M Brück et al.   ISME Journal

Association of Thioautotrophic Bacteria with Deep-Sea Sponges

(2010) Miyuki Nishijima et al.   MARINE BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Evidence of nitrification and denitrification in high and low microbial abundance sponges

(2009) Marie-Lise Schläppy et al.   MARINE BIOLOGY

Antitumour polyether macrolides: Four new halichondrins from the New Zealand deep-water marine sponge Lissodendoryx sp.

(2008) Sarah J.H. Hickford et al.   BIOORGANIC & MEDICINAL CHEMISTRY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome

(2008) Jonathan Kennedy et al.   ENVIRONMENTAL MICROBIOLOGY

Lysobacter spongiicola sp. nov., isolated from a deep-sea sponge

(2008) L. A. Romanenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp.

(2008) Wolfram M Brück et al.   ISME Journal

Isolation and Analysis of Bacteria with Antimicrobial Activities from the Marine Sponge Haliclona simulans Collected from Irish Waters

(2008) Jonathan Kennedy et al.   MARINE BIOTECHNOLOGY

Phylogenetic Diversity and Spatial Distribution of the Microbial Community Associated with the Caribbean Deep-water Sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA Gene Analysis

(2008) Birte Meyer et al.   MICROBIAL ECOLOGY