Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA)
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA)
Authors
Keywords
Lakes, Community structure, Fresh water, Algae, Sequence alignment, Sequence databases, Actinobacteria, Water columns
Journal
PLoS One
Volume 12, Issue 5, Pages e0177488
Publisher
Public Library of Science (PLoS)
Online
2017-05-12
DOI
10.1371/journal.pone.0177488
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Algae–bacteria interactions: Evolution, ecology and emerging applications
- (2016) Rishiram Ramanan et al. BIOTECHNOLOGY ADVANCES
- Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences
- (2016) Martin W Hahn et al. ISME Journal
- Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
- (2016) Matthew L Bendall et al. ISME Journal
- Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)
- (2016) Yusuke Okazaki et al. Environmental Microbiology Reports
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
- (2016) Miguel I. Uyaguari-Diaz et al. Microbiome
- Environmental Disturbances Decrease the Variability of Microbial Populations within Periphyton
- (2016) Cristina M. Herren et al. mSystems
- Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions
- (2015) Kenly A. Hiller et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Enhancing microalgal biomass productivity by engineering a microalgal–bacterial community
- (2015) Dae-Hyun Cho et al. BIORESOURCE TECHNOLOGY
- Harmful algal blooms and climate change: Learning from the past and present to forecast the future
- (2015) Mark L. Wells et al. HARMFUL ALGAE
- Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
- (2015) Nicole E. Smalley et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Distribution patterns of the abundance of major bacterial and archaeal groups in Patagonian lakes
- (2015) M. Romina Schiaffino et al. JOURNAL OF PLANKTON RESEARCH
- Phycosphere bacterial diversity in green algae reveals an apparent similarity across habitats
- (2015) Rishiram Ramanan et al. Algal Research-Biomass Biofuels and Bioproducts
- A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan
- (2015) Ryan J. Newton et al. Frontiers in Microbiology
- In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)
- (2015) Noha H. Youssef et al. PLoS One
- Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus
- (2015) Imen Louati et al. PLoS One
- 454 Pyrosequencing reveals diversity of Bdellovibrio and like organisms in fresh and salt water
- (2014) Nan Li et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Free-Living and Particle-Associated Bacterioplankton in Large Rivers of the Mississippi River Basin Demonstrate Biogeographic Patterns
- (2014) Colin R. Jackson et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Role of Rhizobium , a plant growth promoting bacterium, in enhancing algal biomass through mutualistic interaction
- (2014) Byung-Hyuk Kim et al. BIOMASS & BIOENERGY
- Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
- (2014) Trevor W Ghylin et al. ISME Journal
- Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing
- (2014) Anna Klindworth et al. Marine Genomics
- Master recyclers: features and functions of bacteria associated with phytoplankton blooms
- (2014) Alison Buchan et al. NATURE REVIEWS MICROBIOLOGY
- Bacterial Community Composition of Size-Fractioned Aggregates within the Phycosphere of Cyanobacterial Blooms in a Eutrophic Freshwater Lake
- (2014) Haiyuan Cai et al. PLoS One
- Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer
- (2014) Hisaya Kojima et al. Scientific Reports
- Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
- (2013) Alexander Eiler et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances
- (2013) Ching-Hung Tseng et al. ISME Journal
- Analysis of the Attached Microbial Community on Mucilaginous Cyanobacterial Aggregates in the Eutrophic Lake Taihu Reveals the Importance of Planctomycetes
- (2013) Hai-Yuan Cai et al. MICROBIAL ECOLOGY
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Spatiotemporal Molecular Analysis of Cyanobacteria Blooms Reveals Microcystis-Aphanizomenon Interactions
- (2013) Todd R. Miller et al. PLoS One
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Successful enrichment of the ubiquitous freshwater acI Actinobacteria
- (2013) Sarahi L. Garcia et al. Environmental Microbiology Reports
- Multitemporal analysis of algal blooms with MERIS images in a deep meromictic lake
- (2013) Mariano Bresciani et al. European Journal of Remote Sensing
- Magnetotactic bacteria from Pavilion Lake, British Columbia
- (2013) Zachery Oestreicher et al. Frontiers in Microbiology
- Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
- (2013) Katarzyna Zaremba-Niedzwiedzka et al. GENOME BIOLOGY
- A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between theMethylococcaceaeand theMethylophilaceae
- (2013) David A.C. Beck et al. PeerJ
- Microalgae-associated bacteria play a key role in the flocculation of Chlorella vulgaris
- (2012) Jimin Lee et al. BIORESOURCE TECHNOLOGY
- The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics
- (2012) Timothy J. Williams et al. ENVIRONMENTAL MICROBIOLOGY
- Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
- (2012) Sarahi L Garcia et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Microbial diversity and diazotrophy associated with the freshwater non-heterocyst forming cyanobacterium Lyngbya robusta
- (2012) Jason N. Woodhouse et al. JOURNAL OF APPLIED PHYCOLOGY
- Impacts of extreme air temperatures on cyanobacteria in five deep peri-Alpine lakes
- (2012) Nicole GALLINA et al. JOURNAL OF LIMNOLOGY
- Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents
- (2012) Morgan M. Steffen et al. PLoS One
- Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
- (2012) H. Teeling et al. SCIENCE
- Metagenomes of Mediterranean Coastal Lagoons
- (2012) Rohit Ghai et al. Scientific Reports
- Prokaryotic community structure and respiration during long-term incubations
- (2012) Federico Baltar et al. MicrobiologyOpen
- State of the World's Freshwater Ecosystems: Physical, Chemical, and Biological Changes
- (2011) Stephen R. Carpenter et al. Annual Review of Environment and Resources
- Flavobacterium johnsoniae as a Model Organism for Characterizing Biopolymer Utilization in Oligotrophic Freshwater Environments
- (2011) Eveline L. W. Sack et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology
- (2011) Ludmila Chistoserdova APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem
- (2011) Seungdae Oh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bacterial community transcription patterns during a marine phytoplankton bloom
- (2011) Johanna M. Rinta-Kanto et al. ENVIRONMENTAL MICROBIOLOGY
- Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance
- (2011) Ashley Shade et al. ENVIRONMENTAL MICROBIOLOGY
- Planctomycetes diversity associated with macroalgae
- (2011) Olga Maria Lage et al. FEMS MICROBIOLOGY ECOLOGY
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
- (2011) B. J. Haas et al. GENOME RESEARCH
- Temporal variability of cyanobacterial populations in the water and sediment samples of Lake Taihu as determined by DGGE and real-time PCR
- (2011) Wenjin Ye et al. HARMFUL ALGAE
- High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
- (2011) Manuel Martinez-Garcia et al. ISME Journal
- Genome Sequence of "Pedosphaera parvula" Ellin514, an Aerobic Verrucomicrobial Isolate from Pasture Soil
- (2011) R. Kant et al. JOURNAL OF BACTERIOLOGY
- Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
- (2011) Rohit Ghai et al. PLoS One
- Improving the culturability of freshwater bacteria using FW70, a low-nutrient solid medium amended with sodium pyruvate
- (2010) Iori Imazaki et al. CANADIAN JOURNAL OF MICROBIOLOGY
- Phylogenetic diversity and metagenomics of candidate division OP3
- (2010) Jana Glöckner et al. ENVIRONMENTAL MICROBIOLOGY
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
- (2010) Susan M. Huse et al. ENVIRONMENTAL MICROBIOLOGY
- Caldilinea tarbellica sp. nov., a filamentous, thermophilic, anaerobic bacterium isolated from a deep hot aquifer in the Aquitaine Basin
- (2010) P. Gregoire et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10
- (2010) K. C.- Y. Lee et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10
- (2010) H. Tamaki et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Ubiquity ofPolynucleobacter necessariusssp.asymbioticusin lentic freshwater habitats of a heterogenous 2000 km2area
- (2009) Jitka Jezberová et al. ENVIRONMENTAL MICROBIOLOGY
- Emended description of the genus Polynucleobacter and the species Polynucleobacter necessarius and proposal of two subspecies, P. necessarius subsp. necessarius subsp. nov. and P. necessarius subsp. asymbioticus subsp. nov.
- (2009) M. W. Hahn et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes
- (2009) Yukiyo Fukunaga et al. JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY
- Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
- (2009) Yong Wang et al. PLoS One
- Methylophilaceaelink methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis
- (2009) Marina G. Kalyuhznaya et al. Environmental Microbiology Reports
- Progress in the Ecological Genetics and Biodiversity of Freshwater Bacteria
- (2008) Jürg B. Logue et al. BIOSCIENCE
- Effective isolation of bacterioplankton genus Polynucleobacter from freshwater environments grown on photochemically degraded dissolved organic matter
- (2008) Keiji Watanabe et al. FEMS MICROBIOLOGY ECOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started