Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep

Hadal water sampling by in situ microbial filtration and fixation (ISMIFF) apparatus

(2019) Yong Wang et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Benthic Carbon Mineralization in Hadal Trenches: Insights From In Situ Determination of Benthic Oxygen Consumption

(2018) Min Luo et al.   GEOPHYSICAL RESEARCH LETTERS

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench

(2018) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum

(2018) Eric W. Getz et al.   mBio

Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench

(2018) Zhimeng Xu et al.   Frontiers in Microbiology

Insight Into the Pico- and Nano-Phytoplankton Communities in the Deepest Biosphere, the Mariana Trench

(2018) Ruoyu Guo et al.   Frontiers in Microbiology

A nearly uniform distributional pattern of heterotrophic bacteria in the Mariana Trench interior

(2018) Jiwei Tian et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean

(2018) Yong Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench

(2018) Xinxu Zhang et al.   Frontiers in Microbiology

Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column

(2017) Anthony D. Bertagnolli et al.   ENVIRONMENTAL MICROBIOLOGY

The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling

(2017) Maliheh Mehrshad et al.   ISME Journal

Provenances, distribution, and accumulation of organic matter in the southern Mariana Trench rim and slope: Implication for carbon cycle and burial in hadal trenches

(2017) Min Luo et al.   MARINE GEOLOGY

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

(2017) Zachary Landry et al.   mBio

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients

(2017) Alyse K. Hawley et al.   Nature Communications

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Benthic carbon mineralization in hadal trenches: Assessment by in situ O 2 microprofile measurements

(2016) F. Wenzhöfer et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Fossil DNA persistence and decay in marine sediment over hundred-thousand-year to million-year time scales

(2016) John B. Kirkpatrick et al.   GEOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench

(2016) Jonathan Tarn et al.   Frontiers in Microbiology

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Submersible- and lander-observed community patterns in the Mariana and New Britain trenches: Influence of productivity and depth on epibenthic and scavenging communities

(2015) Natalya D. Gallo et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth

(2015) Takuro Nunoura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design and evaluation of universal 16S rRNA gene primers for high-throughput sequencing to simultaneously detect DAMO microbes and anammox bacteria

(2015) Yong-Ze Lu et al.   WATER RESEARCH

Recent sediment dynamics in hadal trenches: Evidence for the influence of higher-frequency (tidal, near-inertial) fluid dynamics

(2014) Robert Turnewitsch et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Prokaryotic responses to hydrostatic pressure in the ocean - a review

(2013) Christian Tamburini et al.   ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

(2013) Ronnie N. Glud et al.   Nature Geoscience

Growth temperatures of archaeal communities can be estimated from the guanine-plus-cytosine contents of 16S rRNA gene fragments

(2013) Hiroyuki Kimura et al.   Environmental Microbiology Reports

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

(2013) Rohit Ghai et al.   Scientific Reports

Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system

(2012) Rika E. Anderson et al.   FEMS MICROBIOLOGY ECOLOGY

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

(2012) Martha Zakrzewski et al.   JOURNAL OF BIOTECHNOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

(2010) Carlos W Nossa   WORLD JOURNAL OF GASTROENTEROLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Liparid and macrourid fishes of the hadal zone: in situ observations of activity and feeding behaviour

(2009) A.J Jamieson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Hadal trenches: the ecology of the deepest places on Earth

(2009) Alan J. Jamieson et al.   TRENDS IN ECOLOGY & EVOLUTION

The little bacteria that can - diversity, genomics and ecophysiology of ‘Dehalococcoides’ spp. in contaminated environments

(2009) Neslihan Taş et al.   Microbial Biotechnology

A microdiversity study of anammox bacteria reveals a novelCandidatusScalindua phylotype in marine oxygen minimum zones

(2008) Dagmar Woebken et al.   ENVIRONMENTAL MICROBIOLOGY

Hydrothermal activity and volcano distribution along the Mariana arc

(2008) Edward T. Baker et al.   JOURNAL OF GEOPHYSICAL RESEARCH