Understanding host-microbiome-environment interactions: Insights from Daphnia as a model organism

Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota

(2021) Yingdong Li et al.   BMC GENOMICS

Zooplankton carcasses stimulate microbial turnover of allochthonous particulate organic matter

(2021) Darshan Neubauer et al.   ISME Journal

Freshwater zooplankton microbiome composition is highly flexible and strongly influenced by the environment

(2021) Ester M Eckert et al.   MOLECULAR ECOLOGY

The Role of Microbiome and Genotype in Daphnia magna upon Parasite Re-Exposure

(2021) Lore Bulteel et al.   Genes

Locally adapted gut microbiomes mediate host stress tolerance

(2021) Shira Houwenhuyse et al.   ISME Journal

Targeted Manipulation of Abundant and Rare Taxa in the Daphnia magna Microbiota with Antibiotics Impacts Host Fitness Differentially

(2021) Reilly O. Cooper et al.   mSystems

The thermal regime modifies the response of aquatic keystone species Daphnia to microplastics: Evidence from population fitness, accumulation, histopathological analysis and candidate gene expression

(2021) Kai Lyu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The microbiome mediates the interaction between predation and heavy metals

(2021) Shlair A. Sadeq et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Disentangling Diet- and Medium-Associated Microbes in Shaping Daphnia Gut Microbiome

(2021) Siddiq Akbar et al.   MICROBIAL ECOLOGY

A field experiment reveals seasonal variation in the Daphnia gut microbiome

(2021) Alexander Hegg et al.   OIKOS

Disparate effects of antibiotic-induced microbiome change and enhanced fitness in Daphnia magna

(2020) Asa Motiei et al.   PLoS One

Characterization of key bacterial species in the Daphnia magna microbiota using shotgun metagenomics

(2020) Reilly O. Cooper et al.   Scientific Reports

Food nutrient availability affects epibiont prevalence and richness in natural Daphnia populations

(2020) Lien Reyserhove et al.   LIMNOLOGY AND OCEANOGRAPHY

Environmental Factors and Host Microbiomes Shape Host–Pathogen Dynamics

(2020) Adriana P. Bernardo-Cravo et al.   TRENDS IN PARASITOLOGY

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities

(2020) Emilie Macke et al.   Frontiers in Microbiology

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community

(2020) Martijn Callens et al.   FEMS MICROBIOLOGY ECOLOGY

Daphnia magna model in the toxicity assessment of pharmaceuticals: A review

(2020) Angelika Tkaczyk et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Variations in effects of ectosymbiotic microbes on the growth rates among different species and genotypes of Daphnia fed different algal diets

(2020) Xuan Zhang et al.   ECOLOGICAL RESEARCH

Elevated temperature and toxic Microcystis reduce Daphnia fitness and modulate gut microbiota

(2020) Siddiq Akbar et al.   ENVIRONMENTAL POLLUTION

Molecular characterization of thioredoxin reductase in waterflea Daphnia magna and its expression regulation by polystyrene microplastics

(2019) Jinghong Tang et al.   AQUATIC TOXICOLOGY

Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature

(2019) Jonas Frankel-Bricker et al.   MICROBIAL ECOLOGY

The Mercury-Tolerant Microbiota of the Zooplankton Daphnia Aids in Host Survival and Maintains Fecundity under Mercury Stress

(2019) Jiunn C. Fong et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Changes in the life history traits of Daphnia magna are associated with the gut microbiota composition shaped by diet and antibiotics

(2019) Siddiq Akbar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Daphnia enhances relative reproductive allocation in response to toxic microcystis: Changes in the performance of parthenogenetic and sexual reproduction

(2019) Qiming Zhou et al.   ENVIRONMENTAL POLLUTION

Gene expression and activity of digestive enzymes of Daphnia pulex in response to food quality differences

(2018) Anke Schwarzenberger et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Temporal dynamics of microbiota before and after host death

(2018) David Preiswerk et al.   ISME Journal

Animal host-microbe interactions

(2018) Bethany J. Hoye et al.   JOURNAL OF ANIMAL ECOLOGY

Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen

(2018) Marilou P. Sison-Mangus et al.   Scientific Reports

Microbiota inoculum composition affects holobiont assembly and host growth in Daphnia

(2018) Martijn Callens et al.   Microbiome

Effects of zooplankton carcasses degradation on freshwater bacterial community composition and implications for carbon cycling

(2018) Olesya V. Kolmakova et al.   ENVIRONMENTAL MICROBIOLOGY

Understanding how microbiomes influence the systems they inhabit

(2018) Ed K. Hall et al.   Nature Microbiology

Maternal diet and age alter direct and indirect relationships between life-history traits across multiple generations

(2018) Jared M. Goos et al.   FUNCTIONAL ECOLOGY

Metagenomic insights into zooplankton-associated bacterial communities

(2017) Daniele De Corte et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of environmental pollutants on gut microbiota

(2017) Yuanxiang Jin et al.   ENVIRONMENTAL POLLUTION

Paleolimnology and resurrection ecology: The future of reconstructing the past

(2017) David R. L. Burge et al.   Evolutionary Applications

Understanding interactive inducible defenses of Daphnia and its phytoplankton prey

(2017) Siddiq Akbar et al.   HARMFUL ALGAE

The microbiota of diapause: How host-microbe associations are formed after dormancy in an aquatic crustacean

(2017) Alexandra A. Mushegian et al.   JOURNAL OF ANIMAL ECOLOGY

The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean

(2017) Karen E. Sullam et al.   MICROBIAL ECOLOGY

Life history and eco-evolutionary dynamics in light of the gut microbiota

(2017) Emilie Macke et al.   OIKOS

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

(2017) Samuel A. Smits et al.   SCIENCE

Presence of microbiota reverses the relative performance of Daphnia on two experimental diets

(2017) Alexandra A. Mushegian et al.   ZOOLOGY

Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria

(2017) Emilie Macke et al.   Nature Communications

Early-life disruption of amphibian microbiota decreases later-life resistance to parasites

(2017) Sarah A. Knutie et al.   Nature Communications

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

The importance of calcium in improving resistance of Daphnia to Microcystis

(2017) Siddiq Akbar et al.   PLoS One

Zooplankton Gut Passage Mobilizes Lithogenic Iron for Ocean Productivity

(2016) Katrin Schmidt et al.   CURRENT BIOLOGY

Cyanobacteria facilitate parasite epidemics in Daphnia

(2016) C. Tellenbach et al.   ECOLOGY

Microplastics Alter the Properties and Sinking Rates of Zooplankton Faecal Pellets

(2016) Matthew Cole et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Daphnia as a refuge for an antibiotic resistance gene in an experimental freshwater community

(2016) Ester M. Eckert et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Can environmental change affect host/parasite-mediated speciation?

(2016) Franziska S. Brunner et al.   ZOOLOGY

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

(2016) Eugene Rosenberg et al.   mBio

Rapid evolution of tolerance to toxic Microcystis in two cladoceran grazers

(2016) Xiaodong Jiang et al.   Scientific Reports

Effects of algal food quality on sexual reproduction ofDaphnia magna

(2016) Jong-Yun Choi et al.   Ecology and Evolution

The Microbial Olympics 2016

(2016) Michaeline B. Nelson et al.   Nature Microbiology

The Host as the Driver of the Microbiota in the Gut and External Environment of Drosophila melanogaster

(2015) Adam C.-N. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth promotion and gut microbiota: insights from antibiotic use

(2015) Harald Brüssow   ENVIRONMENTAL MICROBIOLOGY

Betaproteobacteria L imnohabitans strains increase fecundity in the crustacean D aphnia magna : symbiotic relationship between major bacterioplankton and zooplankton in freshwater ecosystem

(2015) Saranya Peerakietkhajorn et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteria-Mediated Effects of Antibiotics on Daphnia Nutrition

(2015) Elena Gorokhova et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Maternal consumption of non-toxicMicrocystisbyDaphnia magnainduces tolerance to toxicMicrocystisin offspring

(2015) Kai Lyu et al.   FRESHWATER BIOLOGY

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

(2015) Martijn Callens et al.   ISME Journal

Copepod carcasses as microbial hot spots for pelagic denitrification

(2015) Ronnie N. Glud et al.   LIMNOLOGY AND OCEANOGRAPHY

Effects of calcium and phosphorus limitation on the nutritional ecophysiology of D aphnia

(2015) Clay Prater et al.   LIMNOLOGY AND OCEANOGRAPHY

Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism

(2015) Ariane C. Kemen et al.   NEW PHYTOLOGIST

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean,Daphnia magna

(2015) Saranya Peerakietkhajorn et al.   Environmental Microbiology Reports

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

A millennial-scale chronicle of evolutionary responses to cultural eutrophication inDaphnia

(2014) Dagmar Frisch et al.   ECOLOGY LETTERS

Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs

(2014) Ester M Eckert et al.   ISME Journal

Water fleas require microbiota for survival, growth and reproduction

(2014) Marilou P Sison-Mangus et al.   ISME Journal

Phenotypic integration plasticity inDaphnia magna: an integral facet of G × E interactions

(2014) S. J. Plaistow et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

DifferingDaphnia magnaassimilation efficiencies for terrestrial, bacterial, and algal carbon and fatty acids

(2013) Sami J. Taipale et al.   ECOLOGY

Evolutionary Ecological Genomics

(2013) Luisa Orsini et al.   MOLECULAR ECOLOGY

Structural modulation of gut microbiota in life-long calorie-restricted mice

(2013) Chenhong Zhang et al.   Nature Communications

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

INFECTIOUS ADAPTATION: POTENTIAL HOST RANGE OF A DEFENSIVE ENDOSYMBIONT INDROSOPHILA

(2012) Tamara S. Haselkorn et al.   EVOLUTION

The influence of bacteria-dominated diets on Daphnia magna somatic growth, reproduction, and lipid composition

(2012) Sami J. Taipale et al.   FEMS MICROBIOLOGY ECOLOGY

Food quality of mixed bacteria–algae diets for Daphnia magna

(2012) Heike M. Freese et al.   HYDROBIOLOGIA

Interactions between environmental stressors: the influence of salinity on host–parasite interactions between Daphnia magna and Pasteuria ramosa

(2012) Matthew D. Hall et al.   OECOLOGIA

Symbiont-mediated insecticide resistance

(2012) Y. Kikuchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking genes to communities and ecosystems: Daphnia as an ecogenomic model

(2012) B. E. Miner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The bacterial parasitePasteuria ramosais not killed if it fails to infect: implications for coevolution

(2012) Kayla C. King et al.   Ecology and Evolution

Toxicity of various silver nanoparticles compared to silver ions in Daphnia magna

(2012) Saba Asghari et al.   JOURNAL OF NANOBIOTECHNOLOGY

Antibiotics affect the growth responses of Daphnia magna to poor food quality

(2011) Alexandra Zalewski et al.   AQUATIC ECOLOGY

Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions

(2011) David Duneau et al.   BMC BIOLOGY

Food quality of heterotrophic bacteria for Daphnia magna: evidence for a limitation by sterols

(2011) Dominik Martin-Creuzburg et al.   FEMS MICROBIOLOGY ECOLOGY

The interactive effects of microcystin and nitrite on life-history parameters of the cladoceran Daphnia obtusa

(2011) Zhou Yang et al.   JOURNAL OF HAZARDOUS MATERIALS

Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna

(2011) Heike M. Freese et al.   MICROBIAL ECOLOGY

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Single dietary amino acids control resting egg production and affect population growth of a key freshwater herbivore

(2011) Ulrike Koch et al.   OECOLOGIA

Diet-switching experiments show rapid accumulation and preferential retention of highly unsaturated fatty acids in Daphnia

(2011) Sami J. Taipale et al.   OIKOS

Dietary Essential Amino Acids Affect the Reproduction of the Keystone Herbivore Daphnia pulex

(2011) Patrick Fink et al.   PLoS One

Linkage between crustacean zooplankton and aquatic bacteria

(2010) KW Tang et al.   AQUATIC MICROBIAL ECOLOGY

Priming effect: bridging the gap between terrestrial and aquatic ecology

(2010) Bertrand Guenet et al.   ECOLOGY

Bacteria dispersal by hitchhiking on zooplankton

(2010) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont

(2010) J. Jaenike et al.   SCIENCE

Comparative metagenomics of Daphnia symbionts

(2009) Weihong Qi et al.   BMC GENOMICS

Transgenerational effects of poor elemental food quality on Daphnia magna

(2009) Paul C. Frost et al.   OECOLOGIA

Host–parasite coevolution: Insights from the Daphnia–parasite model system

(2008) Dieter Ebert   CURRENT OPINION IN MICROBIOLOGY