The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean

The microbiota of diapause: How host-microbe associations are formed after dormancy in an aquatic crustacean

(2017) Alexandra A. Mushegian et al.   JOURNAL OF ANIMAL ECOLOGY

Evolution, human-microbe interactions, and life history plasticity

(2017) Graham Rook et al.   LANCET

Contrasting effects of environment and genetics generate a continuum of parallel evolution

(2017) Yoel E. Stuart et al.   Nature Ecology & Evolution

Temperature-dependent benefits of bacterial exposure in embryonic development ofDaphnia magnaresting eggs

(2016) Alexandra A. Mushegian et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta)

(2016) Laetitia G. E. Wilkins et al.   MOLECULAR ECOLOGY

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Betaproteobacteria L imnohabitans strains increase fecundity in the crustacean D aphnia magna : symbiotic relationship between major bacterioplankton and zooplankton in freshwater ecosystem

(2015) Saranya Peerakietkhajorn et al.   ENVIRONMENTAL MICROBIOLOGY

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

(2015) Martijn Callens et al.   ISME Journal

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Genes mirror geography inDaphnia magna

(2015) Peter D. Fields et al.   MOLECULAR ECOLOGY

Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean,Daphnia magna

(2015) Saranya Peerakietkhajorn et al.   Environmental Microbiology Reports

Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures

(2015) Laetitia G. E. Wilkins et al.   Scientific Reports

Epigenetic Mechanisms and Microbiota as a Toolbox for Plant Phenotypic Adjustment to Environment

(2015) Nathan Vannier et al.   Frontiers in Plant Science

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

(2014) Lev Y Yampolsky et al.   BMC GENOMICS

Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut

(2014) Henning Seedorf et al.   CELL

Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs

(2014) Ester M Eckert et al.   ISME Journal

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

(2014) Daniel P Cariveau et al.   ISME Journal

Water fleas require microbiota for survival, growth and reproduction

(2014) Marilou P Sison-Mangus et al.   ISME Journal

Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection

(2014) Ana Lokmer et al.   ISME Journal

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

(2013) Brian W. Parks et al.   Cell Metabolism

Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress

(2013) Lu Fan et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton

(2013) L. Y. Yampolsky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers

(2012) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna

(2011) Heike M. Freese et al.   MICROBIAL ECOLOGY

The role of developmental plasticity in evolutionary innovation

(2011) A. P. Moczek et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Homeostasis and Inflammation in the Intestine

(2010) Wendy S. Garrett et al.   CELL

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic plasticity's impacts on diversification and speciation

(2010) David W. Pfennig et al.   TRENDS IN ECOLOGY & EVOLUTION

Indirect Effects of Temperature on Stink Bug Fitness, via Maintenance of Gut-Associated Symbionts

(2009) S. S. Prado et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Comparative metagenomics of Daphnia symbionts

(2009) Weihong Qi et al.   BMC GENOMICS

Temperature thresholds for bacterial symbiosis with a sponge

(2008) Nicole S Webster et al.   ISME Journal