Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities

Variable opportunities for outcrossing result in hotspots of novel genetic variation in a pathogen metapopulation

(2019) Anna-Liisa Laine et al.   eLife

Microbiota inoculum composition affects holobiont assembly and host growth in Daphnia

(2018) Martijn Callens et al.   Microbiome

Analyzing eco‐evolutionary dynamics ‐ the challenging complexity of the real world

(2018) Luc De Meester et al.   FUNCTIONAL ECOLOGY

The microbiota of diapause: How host-microbe associations are formed after dormancy in an aquatic crustacean

(2017) Alexandra A. Mushegian et al.   JOURNAL OF ANIMAL ECOLOGY

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Life history and eco-evolutionary dynamics in light of the gut microbiota

(2017) Emilie Macke et al.   OIKOS

Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria

(2017) Emilie Macke et al.   Nature Communications

Caenorhabditis elegans as a Model for Microbiome Research

(2017) Fan Zhang et al.   Frontiers in Microbiology

The Value of a Comparative Approach to Understand the Complex Interplay between Microbiota and Host Immunity

(2017) Norma M. Morella et al.   Frontiers in Immunology

A bacterial filter protects and structures the gut microbiome of an insect

(2016) Michele Caroline Lanan et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Daphnia as a refuge for an antibiotic resistance gene in an experimental freshwater community

(2016) Ester M. Eckert et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

(2016) Antton Alberdi et al.   TRENDS IN ECOLOGY & EVOLUTION

Gut Microbiotas and Host Evolution: Scaling Up Symbiosis

(2016) Michael Shapira   TRENDS IN ECOLOGY & EVOLUTION

Correlations of Host Genetics and Gut Microbiome Composition

(2016) Krystyna Dąbrowska et al.   Frontiers in Microbiology

The Host as the Driver of the Microbiota in the Gut and External Environment of Drosophila melanogaster

(2015) Adam C.-N. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Understanding the ecology and evolution of host-parasite interactions across scales

(2015) Rachel M. Penczykowski et al.   Evolutionary Applications

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

(2015) Martijn Callens et al.   ISME Journal

Insect’s intestinal organ for symbiont sorting

(2015) Tsubasa Ohbayashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean,Daphnia magna

(2015) Saranya Peerakietkhajorn et al.   Environmental Microbiology Reports

Reciprocal immune benefit based on complementary production of antibiotics by the leech Hirudo verbana and its gut symbiont Aeromonas veronii

(2015) Aurélie Tasiemski et al.   Scientific Reports

Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs

(2014) Ester M Eckert et al.   ISME Journal

The relative importance of rapid evolution for plant-microbe interactions depends on ecological context

(2014) C. P. terHorst et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unifying external and internal immune defences

(2014) Oliver Otti et al.   TRENDS IN ECOLOGY & EVOLUTION

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters

(2013) Joe D Taylor et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna

(2011) Heike M. Freese et al.   MICROBIAL ECOLOGY

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria dispersal by hitchhiking on zooplankton

(2010) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative metagenomics of Daphnia symbionts

(2009) Weihong Qi et al.   BMC GENOMICS