Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Rapid Adaptation of a Daphnia magna Population to Metal Stress Is Associated with Heterozygote Excess

(2015) Jennifer D. Hochmuth et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites

(2014) J Routtu et al.   HEREDITY

Water fleas require microbiota for survival, growth and reproduction

(2014) Marilou P Sison-Mangus et al.   ISME Journal

Fecal microbiota transplantation through mid-gut for refractory Crohn's disease: Safety, feasibility, and efficacy trial results

(2014) Bota Cui et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

A Matching-Allele Model Explains Host Resistance to Parasites

(2013) Pepijn Luijckx et al.   CURRENT BIOLOGY

Dynamics of symbiont-mediated antibiotic production reveal efficient long-term protection for beewolf offspring

(2013) Sabrina Koehler et al.   Frontiers in Zoology

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity

(2013) Ryan Thomas Jones et al.   PLoS One

Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton

(2013) L. Y. Yampolsky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Trypanosome Infection Establishment in the Tsetse Fly Gut Is Influenced by Microbiome-Regulated Host Immune Barriers

(2013) Brian L. Weiss et al.   PLoS Pathogens

Gut microbiota instead of host genotype drive the specificity in the interaction of a natural host-parasite system

(2012) Hauke Koch et al.   ECOLOGY LETTERS

THE CELLULAR IMMUNE RESPONSE OFDAPHNIA MAGNAUNDER HOST-PARASITE GENETIC VARIATION AND VARIATION IN INITIAL DOSE

(2012) Stuart K. J. R. Auld et al.   EVOLUTION

Fecundity compensation and tolerance to a sterilizing pathogen in Daphnia

(2012) P. F. Vale et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions

(2011) David Duneau et al.   BMC BIOLOGY

Native Microbiota Shape Insect Vector Competence for Human Pathogens

(2011) Chris M. Cirimotich et al.   Cell Host & Microbe

Treating Clostridium difficile Infection With Fecal Microbiota Transplantation

(2011) Johan S. Bakken et al.   Clinical Gastroenterology and Hepatology

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The first-generation Daphnia magna linkage map

(2010) Jarkko Routtu et al.   BMC GENOMICS

Benefits of host genetic diversity for resistance to infection depend on parasite diversity

(2010) Holly H. Ganz et al.   ECOLOGY

Cloning of the unculturable parasite Pasteuria ramosa and its Daphnia host reveals extreme genotype-genotype interactions

(2010) Pepijn Luijckx et al.   ECOLOGY LETTERS

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5

(2010) M. Vijay-Kumar et al.   SCIENCE

Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont

(2010) J. Jaenike et al.   SCIENCE

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Comparative metagenomics of Daphnia symbionts

(2009) Weihong Qi et al.   BMC GENOMICS

Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

(2008) Peter J. Turnbaugh et al.   Cell Host & Microbe

Host–parasite coevolution: Insights from the Daphnia–parasite model system

(2008) Dieter Ebert   CURRENT OPINION IN MICROBIOLOGY

Genetic diversity ofDaphnia magnapopulations enhances resistance to parasites

(2008) Florian Altermatt et al.   ECOLOGY LETTERS

Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota

(2008) Zaruhi A. Khachatryan et al.   PLoS One

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE