Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement

A five-transgene cassette confers broad-spectrum resistance to a fungal rust pathogen in wheat

(2021) Ming Luo et al.   NATURE BIOTECHNOLOGY

What Makes Bread and Durum Wheat Different?

(2021) Anna M. Mastrangelo et al.   TRENDS IN PLANT SCIENCE

Creation and judicious application of a wheat resistance gene atlas

(2021) Amber N. Hafeez et al.   Molecular Plant

Fine mapping of a powdery mildew resistance gene MlIW39 derived from wild emmer wheat (Triticum turgidum ssp. dicoccoides)

(2021) Lina Qiu et al.   THEORETICAL AND APPLIED GENETICS

Reducing the size of an alien segment carrying leaf rust and stripe rust resistance in wheat

(2020) Sofia Khazan et al.   BMC PLANT BIOLOGY

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

Triticum population sequencing provides insights into wheat adaptation

(2020) Yao Zhou et al.   NATURE GENETICS

Multiple wheat genomes reveal global variation in modern breeding

(2020) Sean Walkowiak et al.   NATURE

A haplotype-led approach to increase the precision of wheat breeding

(2020) Jemima Brinton et al.   Communications Biology

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

(2019) Sanu Arora et al.   NATURE BIOTECHNOLOGY

Durum wheat genome highlights past domestication signatures and future improvement targets

(2019) Marco Maccaferri et al.   NATURE GENETICS

Tracing the ancestry of modern bread wheats

(2019) Caroline Pont et al.   NATURE GENETICS

An Update of Recent Use of Aegilops Species in Wheat Breeding

(2019) Masahiro Kishii   Frontiers in Plant Science

Pervasive hybridizations in the history of wheat relatives

(2019) Sylvain Glémin et al.   Science Advances

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana

(2019) Anna-Lena Van de Weyer et al.   CELL

Hybridization preceded radiation in diploid wheats

(2019) Stella Huynh et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome‐wide sequence information reveals recurrent hybridization among diploid wheat wild relatives

(2019) Nadine Bernhardt et al.   PLANT JOURNAL

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function

(2018) Jiorgos Kourelis et al.   PLANT CELL

Resistance of Aegilops longissima to the Rusts of Wheat

(2018) Shuyi Huang et al.   PLANT DISEASE

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

DArTseq-based analysis of genomic relationships among species of tribe Triticeae

(2018) Offiong U. Edet et al.   Scientific Reports

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

Discovery and characterization of two new stem rust resistance genes in Aegilops sharonensis

(2017) Guotai Yu et al.   THEORETICAL AND APPLIED GENETICS

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

(2017) Sebastian Beier et al.   Scientific Data

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Introgression of leaf rust and stripe rust resistance from Sharon goatgrass (Aegilops sharonensis Eig) into bread wheat (Triticum aestivum L.)

(2014) E. Millet et al.   GENOME

Resistance ofAegilopsSpecies from Israel to Widely Virulent African and Israeli Races of the Wheat Stem Rust Pathogen

(2014) Jeness C. Scott et al.   PLANT DISEASE

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Aegilops tauschiisingle nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

(2013) Jirui Wang et al.   NEW PHYTOLOGIST

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum

(2008) T. Eilam et al.   GENOME

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY