Genome‐wide sequence information reveals recurrent hybridization among diploid wheat wild relatives
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Title
Genome‐wide sequence information reveals recurrent hybridization among diploid wheat wild relatives
Authors
Keywords
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Journal
PLANT JOURNAL
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-12-10
DOI
10.1111/tpj.14641
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Note: Only part of the references are listed.- Pervasive hybridizations in the history of wheat relatives
- (2019) Sylvain Glémin et al. Science Advances
- Hybridization preceded radiation in diploid wheats
- (2019) Stella Huynh et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
- (2018) Heather Rose Kates et al. AMERICAN JOURNAL OF BOTANY
- Inference of species phylogenies from bi-allelic markers using pseudo-likelihood
- (2018) Jiafan Zhu et al. BIOINFORMATICS
- ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
- (2018) Chao Zhang et al. BMC BIOINFORMATICS
- Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae)
- (2018) Geneviève Leduc-Robert et al. BMC EVOLUTIONARY BIOLOGY
- Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping-by-sequencing
- (2018) Mona Schreiber et al. Evolutionary Applications
- Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
- (2018) Diego F. Morales-Briones et al. NEW PHYTOLOGIST
- Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above
- (2018) Tamara Villaverde et al. NEW PHYTOLOGIST
- Inferring Phylogenetic Networks Using PhyloNet
- (2018) Dingqiao Wen et al. SYSTEMATIC BIOLOGY
- Shifting the limits in wheat research and breeding using a fully annotated reference genome
- (2018) et al. SCIENCE
- Bayesian Inference of Species Networks from Multilocus Sequence Data
- (2017) Chi Zhang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
- (2017) Ming-Cheng Luo et al. NATURE
- Major structural genomic alterations can be associated with hybrid speciation in Aegilops markgrafii (Triticeae)
- (2017) Tatiana V. Danilova et al. PLANT JOURNAL
- Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data
- (2017) Dingqiao Wen et al. SYSTEMATIC BIOLOGY
- A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation
- (2016) Hussein A. Hejase et al. BMC BIOINFORMATICS
- Reconciling the evolutionary origin of bread wheat (Triticum aestivum )
- (2016) Moaine El Baidouri et al. NEW PHYTOLOGIST
- PGP repository: a plant phenomics and genomics data publication infrastructure
- (2016) Daniel Arend et al. Database-The Journal of Biological Databases and Curation
- Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent
- (2016) Dingqiao Wen et al. PLoS Genetics
- Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
- (2016) Claudia Solís-Lemus et al. PLoS Genetics
- How reticulated are species?
- (2015) James Mallet et al. BIOESSAYS
- Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
- (2015) Stephen A Smith et al. BMC EVOLUTIONARY BIOLOGY
- A maximum pseudo-likelihood approach for phylogenetic networks
- (2015) Yun Yu et al. BMC GENOMICS
- Historical introgression among the American live oaks and the comparative nature of tests for introgression
- (2015) Deren A. R. Eaton et al. EVOLUTION
- Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased
- (2015) Zhenxiang Xi et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Chloroplast phylogeny ofTriticum/Aegilopsspecies is not incongruent with an ancient homoploid hybrid origin of the ancestor of the bread wheat D-genome
- (2015) Simen Rød Sandve et al. NEW PHYTOLOGIST
- Multiple rounds of ancient and recent hybridizations have occurred within theAegilops-Triticumcomplex
- (2015) Lin-Feng Li et al. NEW PHYTOLOGIST
- A re-evaluation of the homoploid hybrid origin ofAegilops tauschii, the donor of the wheat D-subgenome
- (2015) Lin-Feng Li et al. NEW PHYTOLOGIST
- Detection and Polarization of Introgression in a Five-Taxon Phylogeny
- (2015) James B. Pease et al. SYSTEMATIC BIOLOGY
- Species-Level Phylogeny and Polyploid Relationships inHordeum(Poaceae) Inferred by Next-Generation Sequencing andIn SilicoCloning of Multiple Nuclear Loci
- (2015) Jonathan Brassac et al. SYSTEMATIC BIOLOGY
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
- (2014) Deren A. R. Eaton BIOINFORMATICS
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- e!DAL - a framework to store, share and publish research data
- (2014) Daniel Arend et al. BMC BIOINFORMATICS
- Buying in to bioinformatics: an introduction to commercial sequence analysis software
- (2014) David Roy Smith BRIEFINGS IN BIOINFORMATICS
- Evolutionary History of Wild Barley (Hordeum vulgare subsp. spontaneum) Analyzed Using Multilocus Sequence Data and Paleodistribution Modeling
- (2014) Sabine S. Jakob et al. Genome Biology and Evolution
- Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
- (2014) Simon H. Martin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unlocking the secondary gene-pool of barley with next-generation sequencing
- (2014) Neele Wendler et al. PLANT BIOTECHNOLOGY JOURNAL
- Maximum likelihood inference of reticulate evolutionary histories
- (2014) Yun Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient hybridizations among the ancestral genomes of bread wheat
- (2014) T. Marcussen et al. SCIENCE
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- (2014) et al. SCIENCE
- Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics
- (2014) Kevin Weitemier et al. Applications in Plant Sciences
- Draft genome of the wheat A-genome progenitor Triticum urartu
- (2013) Hong-Qing Ling et al. NATURE
- Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
- (2013) Jizeng Jia et al. NATURE
- A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
- (2013) M.-C. Luo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
- (2013) Deren A. R. Eaton et al. SYSTEMATIC BIOLOGY
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
- (2012) Jesse A. Poland et al. PLoS One
- Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins
- (2012) A. Eriksson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
- (2012) Daniel H. Huson et al. SYSTEMATIC BIOLOGY
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
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- (2012) Yun Yu et al. PLoS Genetics
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- Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)
- (2011) Juan S Escobar et al. BMC EVOLUTIONARY BIOLOGY
- Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis
- (2011) Nils Arrigo et al. Evolutionary Applications
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- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unlocking the Barley Genome by Chromosomal and Comparative Genomics
- (2011) Klaus F.X. Mayer et al. PLANT CELL
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- (2011) T. Matsumoto et al. PLANT PHYSIOLOGY
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
- (2011) Yun Yu et al. SYSTEMATIC BIOLOGY
- The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
- (2010) T. Junier et al. BIOINFORMATICS
- AN INTEGRATIVE TEST OF THE DEAD-END HYPOTHESIS OF SELFING EVOLUTION IN TRITICEAE (POACEAE)
- (2010) Juan S. Escobar et al. EVOLUTION
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Phylogeny and genetic diversity of D-genome species of Aegilops and Triticum (Triticeae, Poaceae) from Iran based on microsatellites, ITS, and trnL-F
- (2010) Firouzeh Bordbar et al. PLANT SYSTEMATICS AND EVOLUTION
- A Draft Sequence of the Neandertal Genome
- (2010) R. E. Green et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
- (2008) Cuong Than et al. BMC BIOINFORMATICS
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