The origins and spread of domestic horses from the Western Eurasian steppes

Heterogeneous Hunter-Gatherer and Steppe-Related Ancestries in Late Neolithic and Bell Beaker Genomes from Present-Day France

(2021) Andaine Seguin-Orlando et al.   CURRENT BIOLOGY

Assessing the Performance of qpAdm: A Statistical Tool for Studying Population Admixture

(2021) Éadaoin Harney et al.   GENETICS

Advancing admixture graph estimation via maximum likelihood network orientation

(2021) Erin K Molloy et al.   BIOINFORMATICS

Assessing DNA Sequence Alignment Methods for Characterizing Ancient Genomes and Methylomes

(2020) Marine Poullet et al.   Frontiers in Ecology and Evolution

THE INTCAL20 NORTHERN HEMISPHERE RADIOCARBON AGE CALIBRATION CURVE (0–55 CAL kBP)

(2020) Paula J Reimer et al.   RADIOCARBON

Predicting geographic location from genetic variation with deep neural networks

(2020) CJ Battey et al.   eLife

Inactivation of the GATA cofactor ZFPM1 results in abnormal development of dorsal raphe serotonergic neuron subtypes and increased anxiety-like behaviour

(2020) Laura Tikker et al.   JOURNAL OF NEUROSCIENCE

Ancient DNA shows domestic horses were introduced in the southern Caucasus and Anatolia during the Bronze Age

(2020) Silvia Guimaraes et al.   Science Advances

Two GWAS-identified variants are associated with lumbar spinal stenosis and Gasdermin-C expression in Chinese population

(2020) Hua Jiang et al.   Scientific Reports

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

(2019) Antoine Fages et al.   CELL

The horse Y chromosome as an informative marker for tracing sire lines

(2019) Sabine Felkel et al.   Scientific Reports

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Neolithic population crash in northwest Europe associated with agricultural crisis

(2019) Sue Colledge et al.   QUATERNARY RESEARCH

The formation of human populations in South and Central Asia

(2019) Vagheesh M. Narasimhan et al.   SCIENCE

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

137 ancient human genomes from across the Eurasian steppes

(2018) Peter de Barros Damgaard et al.   NATURE

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

(2018) Charleen Gaunitz et al.   SCIENCE

The first horse herders and the impact of early Bronze Age steppe expansions into Asia

(2018) Peter de Barros Damgaard et al.   SCIENCE

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Improved de novo genomic assembly for the domestic donkey

(2018) Gabriel Renaud et al.   Science Advances

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

(2018) Daniel J. Lawson et al.   Nature Communications

Genome-wide meta-analysis of 158,000 individuals of European ancestry identifies three loci associated with chronic back pain

(2018) Pradeep Suri et al.   PLoS Genetics

Comprehensive characterization of horse genome variation by whole-genome sequencing of 88 horses

(2018) V. Jagannathan et al.   ANIMAL GENETICS

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating mobility using sparse data: Application to human genetic variation

(2017) Liisa Loog et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient genomic changes associated with domestication of the horse

(2017) Pablo Librado et al.   SCIENCE

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

Bayesian Analysis of Radiocarbon Dates

(2016) Christopher Bronk Ramsey   RADIOCARBON

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

(2015) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

(2015) Cristina Gamba et al.   Molecular Ecology Resources

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

Visualizing spatial population structure with estimated effective migration surfaces

(2015) Desislava Petkova et al.   NATURE GENETICS

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

(2015) Pablo Librado et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

(2014) N. Rohland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

(2014) Mikkel Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Speciation with gene flow in equids despite extensive chromosomal plasticity

(2014) Hákon Jónsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

(2013) Rasmus Heller et al.   PLoS One

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Extra-Mediterranean refugia: The rule and not the exception?

(2012) Thomas Schmitt et al.   Frontiers in Zoology

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

(2012) Lisa S. Andersson et al.   NATURE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Earliest Horse Harnessing and Milking

(2009) A. K. Outram et al.   SCIENCE