Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic

(2015) Vincent J. Lynch et al.   Cell Reports

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The Projection of a Test Genome onto a Reference Population and Applications to Humans and Archaic Hominins

(2014) Melinda A. Yang et al.   GENETICS

Genomic characterization of the Przewalski׳s horse inhabiting Mongolian steppe by whole genome re-sequencing

(2014) Kyoung-Tag Do et al.   Livestock Science

Ancient Whole Genome Enrichment Using Baits Built from Modern DNA

(2014) Jacob M. Enk et al.   MOLECULAR BIOLOGY AND EVOLUTION

Shotgun microbial profiling of fossil remains

(2014) C. Der Sarkissian et al.   MOLECULAR ECOLOGY

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

(2014) Iñigo Olalde et al.   NATURE

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

The ancient Yakuts: a population genetic enigma

(2014) C. Keyser et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA

(2014) Bastiaan Star et al.   PLoS One

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations

(2014) Alexia Cardona et al.   PLoS One

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

(2014) Mikkel Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Speciation with gene flow in equids despite extensive chromosomal plasticity

(2014) Hákon Jónsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Thyroid hormone actions are temperature-specific and regulate thermal acclimation in zebrafish (Danio rerio)

(2013) Alexander G Little et al.   BMC BIOLOGY

FBXL21 Regulates Oscillation of the Circadian Clock through Ubiquitination and Stabilization of Cryptochromes

(2013) Arisa Hirano et al.   CELL

Gonadal steroid hormones and the hypothalamo–pituitary–adrenal axis

(2013) Robert J. Handa et al.   FRONTIERS IN NEUROENDOCRINOLOGY

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

(2013) J. S. Pedersen et al.   GENOME RESEARCH

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

Identification of Genetic Variation on the Horse Y Chromosome and the Tracing of Male Founder Lineages in Modern Breeds

(2013) Barbara Wallner et al.   PLoS One

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

(2013) Andaine Seguin-Orlando et al.   PLoS One

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

(2012) Susanna Sawyer et al.   PLoS One

Epidermal Transglutaminase (TGase 3) Is Required for Proper Hair Development, but Not the Formation of the Epidermal Barrier

(2012) Susan John et al.   PLoS One

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

(2012) A. Achilli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication

(2011) Sebastian Lippold et al.   BMC EVOLUTIONARY BIOLOGY

A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski's Horses

(2011) Hiroki Goto et al.   Genome Biology and Evolution

Cold Stress Induces an Adrenocortical Response in Bottlenose Dolphins (Tursiops truncatus)

(2011) Dorian S. Houser et al.   JOURNAL OF ZOO AND WILDLIFE MEDICINE

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Human evolution in Siberia: from frozen bodies to ancient DNA

(2010) Eric Crubézy et al.   BMC EVOLUTIONARY BIOLOGY

The complete mitochondrial genome and phylogenetic analysis of the Debao pony (Equus caballus)

(2010) Qinyang Jiang et al.   MOLECULAR BIOLOGY REPORTS

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Database mining for selection of SNP markers useful in admixture mapping

(2009) Tesfaye M Baye et al.   BioData Mining

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH