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Title
Ancient genomic changes associated with domestication of the horse
Authors
Keywords
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Journal
SCIENCE
Volume 356, Issue 6336, Pages 442-445
Publisher
American Association for the Advancement of Science (AAAS)
Online
2017-04-28
DOI
10.1126/science.aam5298
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- (2015) F. Racimo GENETICS
- FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
- (2015) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2015) Anna-Sapfo Malaspinas MOLECULAR ECOLOGY
- Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing
- (2015) Cristina Gamba et al. Molecular Ecology Resources
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- (2015) Freyja Imsland et al. NATURE GENETICS
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- (2015) Duy Tin Truong et al. NATURE METHODS
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- (2015) Pablo Librado et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2015) Gemma G. R. Murray et al. SYSTEMATIC BIOLOGY
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- (2015) Rebecca Killick et al. Journal of Statistical Software
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- (2015) Mirjam Frischknecht et al. PLoS One
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- (2014) Jessica L. Petersen et al. ANIMAL GENETICS
- ngsTools: methods for population genetics analyses from next-generation sequencing data
- (2014) Matteo Fumagalli et al. BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
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- (2014) Julia Metzger et al. BMC GENOMICS
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- (2014) David S Campo et al. BMC GENOMICS
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- (2014) Joseph J. Gillespie et al. Genome Biology and Evolution
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- (2014) Kyoung-Tag Do et al. Livestock Science
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- (2014) C. Der Sarkissian et al. MOLECULAR ECOLOGY
- Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
- (2014) Mikkel Schubert et al. Nature Protocols
- Prehistoric genomes reveal the genetic foundation and cost of horse domestication
- (2014) Mikkel Schubert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) Hákon Jónsson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome flux and stasis in a five millennium transect of European prehistory
- (2014) Cristina Gamba et al. Nature Communications
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- (2013) Regula Hauswirth et al. ANIMAL GENETICS
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- (2013) Hákon Jónsson et al. BIOINFORMATICS
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- (2011) T. Révay et al. Sexual Development
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- (2010) Bruno S. Milagres et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
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- (2010) N. Orr et al. ANIMAL GENETICS
- Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance
- (2010) E. W. Hill et al. ANIMAL GENETICS
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- (2010) Emmeline W Hill et al. BMC GENOMICS
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- (2010) J. GU et al. EQUINE VETERINARY JOURNAL
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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- (2010) Leah S. Brault et al. GENOMICS
- The complete mitochondrial genome and phylogenetic analysis of the Debao pony (Equus caballus)
- (2010) Qinyang Jiang et al. MOLECULAR BIOLOGY REPORTS
- Genetic history of an archaic hominin group from Denisova Cave in Siberia
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- mrsFAST: a cache-oblivious algorithm for short-read mapping
- (2010) Faraz Hach et al. NATURE METHODS
- An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications
- (2010) Sophie Champlot et al. PLoS One
- Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
- (2010) X. Yi et al. SCIENCE
- A Draft Sequence of the Neandertal Genome
- (2010) R. E. Green et al. SCIENCE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Whole-Genome SNP Association in the Horse: Identification of a Deletion in Myosin Va Responsible for Lavender Foal Syndrome
- (2010) Samantha A. Brooks et al. PLoS Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Detection of nonneutral substitution rates on mammalian phylogenies
- (2009) K. S. Pollard et al. GENOME RESEARCH
- Ecology of Rickettsia felis: A Review
- (2009) Kathryn E. Reif et al. JOURNAL OF MEDICAL ENTOMOLOGY
- Personalized copy number and segmental duplication maps using next-generation sequencing
- (2009) Can Alkan et al. NATURE GENETICS
- Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
- (2009) Adrian W. Briggs et al. NUCLEIC ACIDS RESEARCH
- Coat Color Variation at the Beginning of Horse Domestication
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- (2009) A. K. Outram et al. SCIENCE
- Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
- (2009) C. M. Wade et al. SCIENCE
- Missense Mutation in Exon 2 of SLC36A1 Responsible for Champagne Dilution in Horses
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