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Title
Vision, challenges and opportunities for a Plant Cell Atlas
Authors
Keywords
-
Journal
eLife
Volume 10, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2021-09-07
DOI
10.7554/elife.66877
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Note: Only part of the references are listed.- Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level
- (2021) Andrew Farmer et al. Molecular Plant
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- (2021) Bruno Pok Man Ngou et al. NATURE
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- (2021) James Barrett et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
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- (2021) Kaisa Kajala et al. CELL
- A cis-regulatory atlas in maize at single-cell resolution
- (2021) Alexandre P. Marand et al. CELL
- A new era for plant science: spatial single-cell transcriptomics
- (2021) Stefania Giacomello CURRENT OPINION IN PLANT BIOLOGY
- Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants
- (2021) Yutaro Shimizu et al. Nature Communications
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- (2021) Hiroki Irieda et al. Nature Communications
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- (2020) Shijuan Han et al. ANNALS OF BOTANY
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- (2020) Markus Niehaus et al. PLANT PHYSIOLOGY
- Automated Methods Enable Direct Computation on Phenotypic Descriptions for Novel Candidate Gene Prediction
- (2020) Ian R. Braun et al. Frontiers in Plant Science
- Regulation and Evolution of C4 Photosynthesis
- (2020) Urte Schlüter et al. Annual Review of Plant Biology
- The promise of single-cell genomics in plants
- (2020) José L McFaline-Figueroa et al. CURRENT OPINION IN PLANT BIOLOGY
- Structural basis of receptor recognition by SARS-CoV-2
- (2020) Jian Shang et al. NATURE
- Enabling reusability of plant phenomic datasets with MIAPPE 1.1
- (2020) Evangelia A. Papoutsoglou et al. NEW PHYTOLOGIST
- Integrative Methods and Practical Challenges for Single-Cell Multi-omics
- (2020) Anjun Ma et al. TRENDS IN BIOTECHNOLOGY
- A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat
- (2020) Nikolai M Adamski et al. eLife
- Phosphorylation of the CAMTA3 transcription factor triggers its destabilization and nuclear export.
- (2020) Xiyuan Jiang et al. PLANT PHYSIOLOGY
- Proximity labeling proteomics reveals critical regulators for inner nuclear membrane protein degradation in plants
- (2020) Aobo Huang et al. Nature Communications
- Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress
- (2020) Sang-Chul Kim et al. Nature Communications
- Single-particle cryo-EM at atomic resolution
- (2020) Takanori Nakane et al. NATURE
- Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development
- (2020) Briardo Llorente et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- EPSIN1 and MTV1 define functionally overlapping but molecularly distincttrans-Golgi network subdomains inArabidopsis
- (2020) Laura Heinze et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A machine learning Automated Recommendation Tool for synthetic biology
- (2020) Tijana Radivojević et al. Nature Communications
- Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
- (2020) Jie Zhang et al. Nature Communications
- Oxylipins in plastidial retrograde signaling
- (2020) Paula Muñoz et al. Redox Biology
- Plant science decadal vision 2020–2030: Reimagining the potential of plants for a healthy and sustainable future
- (2020) Natalie Henkhaus et al. Plant Direct
- First plant cell atlas workshop report
- (2020) Selena Rice et al. Plant Direct
- Development of native MS capabilities on an extended mass range Q-TOF MS
- (2020) Christopher S. Mallis et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Sensors for the quantification, localization and analysis of the dynamics of plant hormones
- (2020) Reika Isoda et al. PLANT JOURNAL
- Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings
- (2019) R. Glen Uhrig et al. PLANT JOURNAL
- Current understanding of GUN1: a key mediator involved in biogenic retrograde signaling
- (2019) Paolo Pesaresi et al. PLANT CELL REPORTS
- A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root
- (2019) Tian-Qi Zhang et al. Molecular Plant
- Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
- (2019) Brian Hie et al. NATURE BIOTECHNOLOGY
- Default activation and nuclear translocation of the plant cellular energy sensor SnRK1 regulate metabolic stress responses and development.
- (2019) Matthew Ramon et al. PLANT CELL
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- A periodic table of cell types
- (2019) Bo Xia et al. DEVELOPMENT
- Certain new plant breeding techniques and their marketability in the context of EU GMO legislation – recent developments
- (2019) Tomasz Zimny et al. New Biotechnology
- Metabolons in plant primary and secondary metabolism
- (2019) Toshihiro Obata PHYTOCHEMISTRY REVIEWS
- An “eFP‐Seq Browser” for Visualizing and Exploring RNA‐Seq Data
- (2019) Alexander Sullivan et al. PLANT JOURNAL
- N-Degron Pathways in Plastids
- (2019) Imen Bouchnak et al. TRENDS IN PLANT SCIENCE
- TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity
- (2019) Yongliang Zhang et al. Nature Communications
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- (2019) Meng Yu et al. CELLULAR AND MOLECULAR LIFE SCIENCES
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- (2019) Ward Decaestecker et al. PLANT CELL
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- (2019) Benjamin J. Stewart et al. SCIENCE
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- (2019) J. Gray Camp et al. SCIENCE
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- (2019) Andrea Mair et al. eLife
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- (2019) Poul Erik Jensen et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2019) Pengchong Wang et al. Nature Chemical Biology
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- (2019) Ilya Korsunsky et al. NATURE METHODS
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- (2019) Matteo Togninalli et al. NUCLEIC ACIDS RESEARCH
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- (2018) Thijs Bol et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2018) Alon Shepon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2018) S. Tylewicz et al. SCIENCE
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- (2018) Alexander B. Rosenberg et al. SCIENCE
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- (2018) Antonio Fabregat et al. PLoS Computational Biology
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- (2018) Arpiar Saunders et al. CELL
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- (2018) Amit Zeisel et al. CELL
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- (2018) Nicholas Smirnoff et al. NEW PHYTOLOGIST
- OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
- (2018) Gopal P. Sarma et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- (2018) Christian R Boehm et al. PLANT PHYSIOLOGY
- The EU Court of Justice extends the GMO Directive to gene-edited organisms
- (2018) Daniela Ruffell FEBS LETTERS
- Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
- (2018) et al. NATURE
- Protein Data Bank: the single global archive for 3D macromolecular structure data
- (2018) et al. NUCLEIC ACIDS RESEARCH
- MaizeGDB 2018: the maize multi-genome genetics and genomics database
- (2018) John L Portwood et al. NUCLEIC ACIDS RESEARCH
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- ATP compartmentation in plastids and cytosol ofArabidopsis thalianarevealed by fluorescent protein sensing
- (2018) Chia Pao Voon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Carbon-concentrating mechanisms in seagrasses
- (2017) Anthony William D Larkum et al. JOURNAL OF EXPERIMENTAL BOTANY
- Protein and membrane trafficking routes in plants: conventional or unconventional?
- (2017) Daphne R Goring et al. JOURNAL OF EXPERIMENTAL BOTANY
- The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog
- (2017) Matteo Togninalli et al. NUCLEIC ACIDS RESEARCH
- Database resources of the National Center for Biotechnology Information
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- ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
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- Local auxin production underlies a spatially restricted neighbor-detection response inArabidopsis
- (2017) Olivier Michaud et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of Phytoene Desaturase Provides Insights into Herbicide Binding and Reaction Mechanisms Involved in Carotene Desaturation
- (2017) Anton Brausemann et al. STRUCTURE
- Bridging Scales in Plant Biology Using Network Science
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- (2017) Marc Libault et al. TRENDS IN PLANT SCIENCE
- Global governance by goal-setting: the novel approach of the UN Sustainable Development Goals
- (2017) Frank Biermann et al. Current Opinion in Environmental Sustainability
- The Human Cell Atlas
- (2017) Aviv Regev et al. eLife
- Development, subcellular positioning and selective protein accumulation in the dimorphic chloroplasts of single-cell C4 species
- (2016) Matthias Erlinghaeuser et al. CURRENT OPINION IN PLANT BIOLOGY
- Polarity in plant asymmetric cell division: Division orientation and cell fate differentiation
- (2016) Wanchen Shao et al. DEVELOPMENTAL BIOLOGY
- The UN Sustainable Development Goals and the dynamics of well-being
- (2016) Robert Costanza et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
- (2016) Mingxun Wang et al. NATURE BIOTECHNOLOGY
- AraPheno: a public database for Arabidopsis thaliana phenotypes
- (2016) Ümit Seren et al. NUCLEIC ACIDS RESEARCH
- The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
- (2016) Eric W. Deutsch et al. NUCLEIC ACIDS RESEARCH
- Plant-based oral vaccines against zoonotic and non-zoonotic diseases
- (2016) Naila Shahid et al. PLANT BIOTECHNOLOGY JOURNAL
- The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability
- (2016) Alexander D. Diehl et al. Journal of Biomedical Semantics
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- Building a plant: cell fate specification in the early Arabidopsis embryo
- (2015) C. A. ten Hove et al. DEVELOPMENT
- The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome
- (2015) Tanya Z. Berardini et al. GENESIS
- Extension of oil biosynthesis during the mid-phase of seed development enhances oil content inArabidopsisseeds
- (2015) Masatake Kanai et al. PLANT BIOTECHNOLOGY JOURNAL
- Conserved Gene Expression Programs in Developing Roots from Diverse Plants
- (2015) Ling Huang et al. PLANT CELL
- The impact of research funding on scientific outputs: Evidence from six smaller European countries
- (2015) Abdullah Gök et al. Journal of the Association for Information Science and Technology
- The Effects of Research & Development Funding on Scientific Productivity: Academic Chemistry, 1990-2009
- (2015) Joshua L. Rosenbloom et al. PLoS One
- Plasma Membranes Are Subcompartmentalized into a Plethora of Coexisting and Diverse Microdomains in Arabidopsis and Nicotiana benthamiana
- (2014) I. K. Jarsch et al. PLANT CELL
- OpenWorm: an open-science approach to modeling Caenorhabditis elegans
- (2014) Balázs Szigeti et al. Frontiers in Computational Neuroscience
- Recent advances in understanding the molecular mechanism of chloroplast photorelocation movement
- (2013) Sam-Geun Kong et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Transcription factor-mediated cell-to-cell signalling in plants
- (2013) X. Han et al. JOURNAL OF EXPERIMENTAL BOTANY
- Sustainable development goals for people and planet
- (2013) David Griggs et al. NATURE
- Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants
- (2013) Chloé Marchive et al. Nature Communications
- Toward interoperable bioscience data
- (2012) Susanna-Assunta Sansone et al. NATURE GENETICS
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- The European Nucleotide Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- Root hair systems biology
- (2010) Marc Libault et al. TRENDS IN PLANT SCIENCE
- DDBJ launches a new archive database with analytical tools for next-generation sequence data
- (2009) Eli Kaminuma et al. NUCLEIC ACIDS RESEARCH
- VirtualPlant: A Software Platform to Support Systems Biology Research
- (2009) M. S. Katari et al. PLANT PHYSIOLOGY
- Control of rice grain-filling and yield by a gene with a potential signature of domestication
- (2008) Ertao Wang et al. NATURE GENETICS
- The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
- (2008) Shulamit Avraham et al. NUCLEIC ACIDS RESEARCH
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