The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1

(2016) Eric W. Deutsch et al.   JOURNAL OF PROTEOME RESEARCH

Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks

(2016) Seungjin Na et al.   MOLECULAR & CELLULAR PROTEOMICS

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer

(2015) Sunghee Woo et al.   JOURNAL OF PROTEOME RESEARCH

On Credibility, Clarity, and Compliance

(2015) Al Burlingame et al.   MOLECULAR & CELLULAR PROTEOMICS

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

(2015) Yasset Perez-Riverol et al.   MOLECULAR & CELLULAR PROTEOMICS

MSPLIT-DIA: sensitive peptide identification for data-independent acquisition

(2015) Jian Wang et al.   NATURE METHODS

The International Nucleotide Sequence Database Collaboration

(2015) Guy Cochrane et al.   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Exploring the potential of public proteomics data

(2015) Marc Vaudel et al.   PROTEOMICS

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

(2015) Yasset Perez-Riverol et al.   PROTEOMICS

A public repository for mass spectrometry imaging data

(2014) Andreas Römpp et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience

(2014) Johannes Griss et al.   MOLECULAR & CELLULAR PROTEOMICS

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

MS-GF+ makes progress towards a universal database search tool for proteomics

(2014) Sangtae Kim et al.   Nature Communications

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective

(2013) Yasset Perez-Riverol et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

From Peptidome to PRIDE: Public proteomics data migration at a large scale

(2013) Attila Csordas et al.   PROTEOMICS

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

PRIDE Inspector: a tool to visualize and validate MS proteomics data

(2012) Rui Wang et al.   NATURE BIOTECHNOLOGY

PASSEL: The PeptideAtlas SRMexperiment library

(2012) Terry Farrah et al.   PROTEOMICS

Fast Multi-blind Modification Search through Tandem Mass Spectrometry

(2011) Seungjin Na et al.   MOLECULAR & CELLULAR PROTEOMICS

Peptide Identification from Mixture Tandem Mass Spectra

(2010) Jian Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS