A periodic table of cell types

Challenges in unsupervised clustering of single-cell RNA-seq data

(2019) Vladimir Yu Kiselev et al.   NATURE REVIEWS GENETICS

Ordering the elements

(2019) Michael D. Gordin   SCIENCE

A single-cell molecular map of mouse gastrulation and early organogenesis

(2019) Blanca Pijuan-Sala et al.   NATURE

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Neural stem cells: origin, heterogeneity and regulation in the adult mammalian brain

(2019) Kirsten Obernier et al.   DEVELOPMENT

Concepts and limitations for learning developmental trajectories from single cell genomics

(2019) Sophie Tritschler et al.   DEVELOPMENT

Exploring single cells in space and time during tissue development, homeostasis and regeneration

(2019) Urs Mayr et al.   DEVELOPMENT

Mapping chromatin modifications at the single cell level

(2019) Connor H. Ludwig et al.   DEVELOPMENT

Recording development with single cell dynamic lineage tracing

(2019) Aaron McKenna et al.   DEVELOPMENT

The evolving concept of cell identity in the single cell era

(2019) Samantha A. Morris   DEVELOPMENT

Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function

(2018) Prajay T. Shah et al.   CELL

The Human Transcription Factors

(2018) Samuel A. Lambert et al.   CELL

Mapping the Mouse Cell Atlas by Microwell-Seq

(2018) Xiaoping Han et al.   CELL

Mapping human development at single-cell resolution

(2018) Sam Behjati et al.   DEVELOPMENT

The principles that govern transcription factor network functions in stem cells

(2018) Hitoshi Niwa   DEVELOPMENT

Exponential scaling of single-cell RNA-seq in the past decade

(2018) Valentine Svensson et al.   Nature Protocols

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

(2018) Alexander B. Rosenberg et al.   SCIENCE

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

(2018) Jeffrey A. Farrell et al.   SCIENCE

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

(2018) James A. Briggs et al.   SCIENCE

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

(2018) Daniel E. Wagner et al.   SCIENCE

Hematopoietic Hierarchy – An Updated Roadmap

(2018) Yifan Zhang et al.   TRENDS IN CELL BIOLOGY

Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis

(2018) Yao Chen et al.   CELL RESEARCH

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis

(2018) Mei Wang et al.   Cell Stem Cell

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq

(2018) Christopher Daniel Green et al.   DEVELOPMENTAL CELL

Lineage dynamics of murine pancreatic development at single-cell resolution

(2018) Lauren E. Byrnes et al.   Nature Communications

The adult human testis transcriptional cell atlas

(2018) Jingtao Guo et al.   CELL RESEARCH

Hexadirectional Modulation of High-Frequency Electrophysiological Activity in the Human Anterior Medial Temporal Lobe Maps Visual Space

(2018) Tobias Staudigl et al.   CURRENT BIOLOGY

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

Single-cell reconstruction of the early maternal–fetal interface in humans

(2018) Roser Vento-Tormo et al.   NATURE

Haematopoiesis in the era of advanced single-cell technologies

(2018) Sten Eirik W. Jacobsen et al.   NATURE CELL BIOLOGY

Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution

(2018) Efrat Shema et al.   NATURE GENETICS

The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids

(2018) Brian P. Hermann et al.   Cell Reports

A single-cell survey of the human first-trimester placenta and decidua

(2018) Hemant Suryawanshi et al.   Science Advances

Human haematopoietic stem cell lineage commitment is a continuous process

(2017) Lars Velten et al.   NATURE CELL BIOLOGY

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

(2017) Todd M Gierahn et al.   NATURE METHODS

Comprehensive single-cell transcriptional profiling of a multicellular organism

(2017) Junyue Cao et al.   SCIENCE

Single-cell epigenomics: Recording the past and predicting the future

(2017) Gavin Kelsey et al.   SCIENCE

Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis

(2017) Emmanouil I. Athanasiadis et al.   Nature Communications

Single-Cell Analysis Identifies Distinct Stages of Human Endothelial-to-Hematopoietic Transition

(2017) Carolina Guibentif et al.   Cell Reports

A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche

(2017) Benedetta Artegiani et al.   Cell Reports

The Human Cell Atlas

(2017) Aviv Regev et al.   eLife

Mammalian Transcription Factor Networks: Recent Advances in Interrogating Biological Complexity

(2017) Adam C. Wilkinson et al.   Cell Systems

What Is Your Conceptual Definition of “Cell Type” in the Context of a Mature Organism?

(2017)   Cell Systems

Hallmarks of Tissue-Resident Lymphocytes

(2016) Xiying Fan et al.   CELL

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes

(2016) Åsa Segerstolpe et al.   Cell Metabolism

Tracing haematopoietic stem cell formation at single-cell resolution

(2016) Fan Zhou et al.   NATURE

Revealing the vectors of cellular identity with single-cell genomics

(2016) Allon Wagner et al.   NATURE BIOTECHNOLOGY

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

(2016) M Ryan Corces et al.   NATURE GENETICS

The origin and evolution of cell types

(2016) Detlev Arendt et al.   NATURE REVIEWS GENETICS

Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells

(2016) Iain C. Macaulay et al.   Cell Reports

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

(2016) Alexander D. Diehl et al.   Journal of Biomedical Semantics

A Single-Cell Transcriptome Atlas of the Human Pancreas

(2016) Mauro J. Muraro et al.   Cell Systems

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

(2016) Maayan Baron et al.   Cell Systems

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

(2015) Allon M. Klein et al.   CELL

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

(2015) Aleksandra A. Kolodziejczyk et al.   Cell Stem Cell

Glia in mammalian development and disease

(2015) J. Bradley Zuchero et al.   DEVELOPMENT

Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

(2015) Jin Li et al.   EMBO REPORTS

Defining cell types and states with single-cell genomics

(2015) Cole Trapnell   GENOME RESEARCH

The Technology and Biology of Single-Cell RNA Sequencing

(2015) Aleksandra A. Kolodziejczyk et al.   MOLECULAR CELL

Proliferation control in neural stem and progenitor cells

(2015) Catarina C. F. Homem et al.   NATURE REVIEWS NEUROSCIENCE

The human transcriptome across tissues and individuals

(2015) M. Mele et al.   SCIENCE

What is an adult stem cell?

(2015) H. Clevers   SCIENCE

Pancreatic islet cell development and regeneration

(2015) Anthony I. Romer et al.   Current Opinion in Endocrinology Diabetes and Obesity

The pluripotency transcription factor network at work in reprogramming

(2014) Hitoshi Niwa   CURRENT OPINION IN GENETICS & DEVELOPMENT

Sequential histone-modifying activities determine the robustness of transdifferentiation

(2014) S. Zuryn et al.   SCIENCE

Pancreatic Stem Cells Remain Unresolved

(2014) Fang-Xu Jiang et al.   STEM CELLS AND DEVELOPMENT

Spermatogonial Stem Cell Self-Renewal and Development

(2013) Mito Kanatsu-Shinohara et al.   Annual Review of Cell and Developmental Biology

Transcriptional control of CD4 and CD8 coreceptor expression during T cell development

(2013) Wilfried Ellmeier et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity

(2013) Esteban O Mazzoni et al.   NATURE NEUROSCIENCE

Direct recordings of grid-like neuronal activity in human spatial navigation

(2013) Joshua Jacobs et al.   NATURE NEUROSCIENCE

Single-cell sequencing-based technologies will revolutionize whole-organism science

(2013) Ehud Shapiro et al.   NATURE REVIEWS GENETICS

Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-β Signaling

(2011) Alan C. Mullen et al.   CELL

Developmental homoplasy: convergence in cellular differentiation

(2010) Anthony Graham   JOURNAL OF ANATOMY

The bioethics of stem cell research and therapy

(2010) Insoo Hyun   JOURNAL OF CLINICAL INVESTIGATION

Developmental genetics of vertebrate glial–cell specification

(2010) David H. Rowitch et al.   NATURE

Evidence for grid cells in a human memory network

(2010) Christian F. Doeller et al.   NATURE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Distinct Regulatory Cascades Govern Extraocular and Pharyngeal Arch Muscle Progenitor Cell Fates

(2009) Ramkumar Sambasivan et al.   DEVELOPMENTAL CELL

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Place Cells, Grid Cells, and the Brain's Spatial Representation System

(2008) Edvard I. Moser et al.   Annual Review of Neuroscience

CD4 T cells: fates, functions, and faults

(2008) J. Zhu et al.   BLOOD

The evolution of cell types in animals: emerging principles from molecular studies

(2008) Detlev Arendt   NATURE REVIEWS GENETICS

A Caenorhabditis elegans model for epithelial-neuronal transdifferentiation

(2008) S. Jarriault et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA