Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
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Title
Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-04-07
DOI
10.3389/fmicb.2017.00559
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Note: Only part of the references are listed.- Control of Multidrug-Resistant Gene Flow in the Environment Through Bacteriophage Intervention
- (2016) Krupa M. Parmar et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection
- (2016) Jeroen De Smet et al. ISME Journal
- Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens
- (2016) Shin-Yi Lee Marzano et al. JOURNAL OF VIROLOGY
- Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol
- (2016) Sergey Malitsky et al. NEW PHYTOLOGIST
- Illuminating structural proteins in viral “dark matter” with metaproteomics
- (2016) Jennifer R. Brum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean
- (2016) Shilo Rosenwasser et al. TRENDS IN MICROBIOLOGY
- RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica
- (2016) Katarzyna Leskinen et al. Viruses-Basel
- Global Transcriptomic Analysis of Interactions between Pseudomonas aeruginosa and Bacteriophage PaP3
- (2016) Xia Zhao et al. Scientific Reports
- The interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
- (2016) Rachelle Mariano et al. Scientific Reports
- Hyperexpansion of RNA Bacteriophage Diversity
- (2016) Siddharth R. Krishnamurthy et al. PLOS BIOLOGY
- Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component
- (2016) Yihui Yuan et al. Frontiers in Microbiology
- Analysis of Immunological, Viral, Genetic, and Environmental Factors That Might Be Associated with Decreased Susceptibility to HIV Infection in Serodiscordant Couples in Florianópolis, Southern Brazil
- (2015) Íris M. Santos et al. AIDS RESEARCH AND HUMAN RETROVIRUSES
- Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli
- (2015) Marta Veses-Garcia et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mass spectrometry-based metabolomics: applications to biomarker and metabolic pathway research
- (2015) Aihua Zhang et al. BIOMEDICAL CHROMATOGRAPHY
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
- (2015) Rachid Ounit et al. BMC GENOMICS
- Ecological and genetic interactions between cyanobacteria and viruses in a low-oxygen mat community inferred through metagenomics and metatranscriptomics
- (2015) Alexander A. Voorhies et al. ENVIRONMENTAL MICROBIOLOGY
- Transcriptomic response during phage infection of a marine cyanobacterium under phosphorus-limited conditions
- (2015) Xingqin Lin et al. ENVIRONMENTAL MICROBIOLOGY
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- (2015) Jessica M Labonté et al. ISME Journal
- Patterns and ecological drivers of ocean viral communities
- (2015) J. R. Brum et al. SCIENCE
- Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
- (2015) Alexander L. Greninger et al. Genome Medicine
- Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
- (2015) Savannah E. Sanchez et al. Jove-Journal of Visualized Experiments
- Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
- (2015) Shirley Bikel et al. Computational and Structural Biotechnology Journal
- Genomic, Proteomic, Morphological, and Phylogenetic Analyses of vB_EcoP_SU10, a Podoviridae Phage with C3 Morphology
- (2015) Mohammadali Khan Mirzaei et al. PLoS One
- Transcriptomic Characterization of an Infection of Mycobacterium smegmatis by the Cluster A4 Mycobacteriophage Kampy
- (2015) Andrew Halleran et al. PLoS One
- Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome
- (2014) Bonnie L Hurwitz et al. ISME Journal
- Systematic Identification of Hypothetical Bacteriophage Proteins Targeting Key Protein Complexes of Pseudomonas aeruginosa
- (2014) An Van den Bossche et al. JOURNAL OF PROTEOME RESEARCH
- A first look at the Oxford Nanopore MinION sequencer
- (2014) Alexander S. Mikheyev et al. Molecular Ecology Resources
- Recent advances in genomic DNA sequencing of microbial species from single cells
- (2014) Roger S. Lasken et al. NATURE REVIEWS GENETICS
- Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
- (2014) B. L. Hurwitz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Relating the metatranscriptome and metagenome of the human gut
- (2014) E. A. Franzosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Unveiling viral–host interactions within the ‘microbial dark matter’
- (2014) Manuel Martínez-García et al. Nature Communications
- Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
- (2014) Noushin Ghaffari et al. Scientific Reports
- Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
- (2014) Joshua N. Burton et al. G3-Genes Genomes Genetics
- Simple and Cost-Effective Restriction Endonuclease Analysis of Human Adenoviruses
- (2014) Arun Kumar Adhikary et al. Biomed Research International
- Interaction Analysis through Proteomic Phage Display
- (2014) Gustav N. Sundell et al. Biomed Research International
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
- (2014) Christopher W. Beitel et al. PeerJ
- Integrated Analysis of Transcriptomic and Proteomic Data
- (2013) Saad Haider et al. CURRENT GENOMICS
- Learning from Bacteriophages - Advantages and Limitations of Phage and Phage-Encoded Protein Applications
- (2013) Zuzanna Drulis-Kawa et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Novel molecular determinants of viral susceptibility and resistance in the lipidome ofEmiliania huxleyi
- (2013) James M. Fulton et al. ENVIRONMENTAL MICROBIOLOGY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- The promise of single-cell sequencing
- (2013) James Eberwine et al. NATURE METHODS
- The microglial sensome revealed by direct RNA sequencing
- (2013) Suzanne E Hickman et al. NATURE NEUROSCIENCE
- Twelve previously unknown phage genera are ubiquitous in global oceans
- (2013) K. Holmfeldt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5
- (2013) Andrew M Kropinski et al. Virology Journal
- Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
- (2013) Simon Roux et al. Nature Communications
- Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
- (2013) S. Roux et al. Open Biology
- Expanding the Marine Virosphere Using Metagenomics
- (2013) Carolina Megumi Mizuno et al. PLoS Genetics
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- (2013) Bonnie L Hurwitz et al. GENOME BIOLOGY
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- (2013) Ijeoma Uzoma et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- A View from Above: Cloud Plots to Visualize Global Metabolomic Data
- (2012) Gary J. Patti et al. ANALYTICAL CHEMISTRY
- Culture-Independent Approaches for Studying Viruses from Hypersaline Environments
- (2012) Fernando Santos et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Transcriptome analysis using next-generation sequencing
- (2012) Kai-Oliver Mutz et al. CURRENT OPINION IN BIOTECHNOLOGY
- Flow cytometry: retrospective, fundamentals and recent instrumentation
- (2012) Julien Picot et al. CYTOTECHNOLOGY
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
- (2012) Yan Wei Lim et al. Journal of Cystic Fibrosis
- Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS–PAGE coupled with nanoLC–ESI–MS/MS bottom-up proteomics
- (2012) Cristina C. Clement et al. Journal of Proteomics
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- PIPS: Pathogenicity Island Prediction Software
- (2012) Siomar C. Soares et al. PLoS One
- Genomic, Proteomic and Physiological Characterization of a T5-like Bacteriophage for Control of Shiga Toxin-Producing Escherichia coli O157:H7
- (2012) Yan D. Niu et al. PLoS One
- Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population
- (2012) A. Vardi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The genome and proteome of a Campylobacter coli bacteriophage vB_CcoM-IBB_35 reveal unusual features
- (2012) Carla M Carvalho et al. Virology Journal
- Metabolomic Characterization of Human Rectal Adenocarcinoma with Intact Tissue Magnetic Resonance Spectroscopy
- (2011) Kate W. Jordan et al. DISEASES OF THE COLON & RECTUM
- Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
- (2011) Margret E. Berg Miller et al. ENVIRONMENTAL MICROBIOLOGY
- Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
- (2011) Rika E. Anderson et al. FEMS MICROBIOLOGY ECOLOGY
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Metatranscriptomic analysis of extremely halophilic viral communities
- (2011) Fernando Santos et al. ISME Journal
- Mass spectrometry imaging for drugs and metabolites
- (2011) Tyler Greer et al. Journal of Proteomics
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- Single-cell genomics
- (2011) Tomer Kalisky et al. NATURE METHODS
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Single Virus Genomics: A New Tool for Virus Discovery
- (2011) Lisa Zeigler Allen et al. PLoS One
- Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
- (2011) D. Arslan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The iPlant Collaborative: Cyberinfrastructure for Plant Biology
- (2011) Stephen A. Goff et al. Frontiers in Plant Science
- Clostridium perfringens bacteriophages ΦCP39O and ΦCP26F: genomic organization and proteomic analysis of the virions
- (2010) Bruce S. Seal et al. ARCHIVES OF VIROLOGY
- NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads
- (2010) G. L. Rosen et al. BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
- (2010) Nynke L. van Berkum et al. Jove-Journal of Visualized Experiments
- MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing
- (2009) Arjen Lommen ANALYTICAL CHEMISTRY
- WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
- (2009) Wolfgang Gerlach et al. BMC BIOINFORMATICS
- Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli
- (2009) Rishi Jain et al. BMC Systems Biology
- Virus et prophages dans les écosystèmes aquatiques
- (2009) Télesphore Sime-Ngando et al. CANADIAN JOURNAL OF MICROBIOLOGY
- The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’
- (2009) Matthew B. Sullivan et al. ENVIRONMENTAL MICROBIOLOGY
- Imaging and quantifying virus fluorescence signals on aquatic aggregates: a new method and its implication for aquatic microbial ecology
- (2009) Birgit Luef et al. FEMS MICROBIOLOGY ECOLOGY
- Viruses manipulate the marine environment
- (2009) Forest Rohwer et al. NATURE
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
- (2009) Sébastien Rodrigue et al. PLoS One
- Fast and accurate automatic structure prediction with HHpred
- (2009) Andrea Hildebrand et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Viral Glycosphingolipids Induce Lytic Infection and Cell Death in Marine Phytoplankton
- (2009) A. Vardi et al. SCIENCE
- Functional viral metagenomics and the next generation of molecular tools
- (2009) Thomas Schoenfeld et al. TRENDS IN MICROBIOLOGY
- The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1
- (2009) Andre Villegas et al. Virology Journal
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- MALDI-FTICR Imaging Mass Spectrometry of Drugs and Metabolites in Tissue
- (2008) Dale S. Cornett et al. ANALYTICAL CHEMISTRY
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Functional consequences of viral impacts on bacterial communities: a food-web model analysis
- (2008) TAKESHI MIKI et al. FRESHWATER BIOLOGY
- An examination of the bacteriophages and bacteria of the Namib desert
- (2008) Eric Prestel et al. JOURNAL OF MICROBIOLOGY
- The potential and challenges of nanopore sequencing
- (2008) Daniel Branton et al. NATURE BIOTECHNOLOGY
- Current challenges in metabolomics for diabetes research: a vital functional genomic tool or just a ploy for gaining funding?
- (2008) Julian L. Griffin et al. PHYSIOLOGICAL GENOMICS
- Desorption electrospray ionization mass spectrometry: Imaging drugs and metabolites in tissues
- (2008) J. M. Wiseman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Symbiotic gut microbes modulate human metabolic phenotypes
- (2008) M. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phages across the biosphere: contrasts of viruses in soil and aquatic environments
- (2008) Sharath Srinivasiah et al. RESEARCH IN MICROBIOLOGY
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