Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut

(2017) Ajeng K. Pramono et al.   MICROBES AND ENVIRONMENTS

The driving force of prophages and CRISPR-Cas system in the evolution of Cronobacter sakazakii

(2017) Haiyan Zeng et al.   Scientific Reports

Viral-Induced Mortality of Prokaryotes in a Tropical Monsoonal Estuary

(2017) Vijayan Jasna et al.   Frontiers in Microbiology

Viral metabolic reprogramming in marine ecosystems

(2016) Bonnie L Hurwitz et al.   CURRENT OPINION IN MICROBIOLOGY

Complete genome sequence of bacteriophage P2559Y, a marine phage that infects Croceibacter atlanticus HTCC2559

(2016) Ilnam Kang et al.   Marine Genomics

Illuminating structural proteins in viral “dark matter” with metaproteomics

(2016) Jennifer R. Brum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases

(2016) Daria Lavysh et al.   VIROLOGY

Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages

(2016) Sherwood R. Casjens et al.   VIROLOGY

Genomes of Abundant and Widespread Viruses from the Deep Ocean

(2016) Carolina Megumi Mizuno et al.   mBio

Phage-mediated horizontal gene transfer of both prophage and heterologous DNA by ϕBB-1, a bacteriophage ofBorrelia burgdorferi

(2016) Christian H. Eggers et al.   Pathogens and Disease

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

(2016) Simon Roux et al.   PeerJ

Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses

(2016) M. Tangherlini et al.   Scientific Reports

Rising to the challenge: accelerated pace of discovery transforms marine virology

(2015) Jennifer R. Brum et al.   NATURE REVIEWS MICROBIOLOGY

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

Function of the CRISPR-Cas System of the Human Pathogen Clostridium difficile

(2015) Pierre Boudry et al.   mBio

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

(2015) Simon Roux et al.   eLife

Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands

(2015) Achim Quaiser et al.   Frontiers in Microbiology

The human urine virome in association with urinary tract infections

(2015) Tasha M. Santiago-Rodriguez et al.   Frontiers in Microbiology

Analysis of virus genomes from glacial environments reveals novel virus groups with unusual host interactions

(2015) Christopher M. Bellas et al.   Frontiers in Microbiology

Inter-individual differences in the gene content of human gut bacterial species

(2015) Ana Zhu et al.   GENOME BIOLOGY

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

High-Level Diversity of Tailed Phages, Eukaryote-Associated Viruses, and Virophage-Like Elements in the Metaviromes of Antarctic Soils

(2014) Olivier Zablocki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

(2014) Simon Roux et al.   BMC BIOINFORMATICS

Automated classification of tailed bacteriophages according to their neck organization

(2014) Anne Lopes et al.   BMC GENOMICS

Dysgonomonas macrotermitis sp. nov., isolated from the hindgut of a fungus-growing termite

(2014) Y.-j. Yang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mining biomass-degrading genes through Illumina-based de novo sequencing and metagenomic analysis of free-living bacteria in the gut of the lower termite Coptotermes gestroi harvested in Vietnam

(2014) Thi Huyen Do et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Characterization of a novel circo-like virus in Aedes vexans mosquitoes from Germany: evidence for a new genus within the family Circoviridae

(2014) M.-M. Garigliany et al.   JOURNAL OF GENERAL VIROLOGY

When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness

(2014) Joseph Bondy-Denomy et al.   JOURNAL OF MICROBIOLOGY

Viromes, Not Gene Markers, for Studying Double-Stranded DNA Virus Communities

(2014) Matthew B. Sullivan   JOURNAL OF VIROLOGY

Development of Giant Bacteriophage  KZ Is Independent of the Host Transcription Apparatus

(2014) P.-J. Ceyssens et al.   JOURNAL OF VIROLOGY

Symbiotic digestion of lignocellulose in termite guts

(2014) Andreas Brune   NATURE REVIEWS MICROBIOLOGY

What Does the Talking?: Quorum Sensing Signalling Genes Discovered in a Bacteriophage Genome

(2014) Katherine R. Hargreaves et al.   PLoS One

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

(2013) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomic Network and Comparative Genomics Reveal a Diverged Member of the ϕKZ-Related Group, Marine Vibrio Phage ϕJM-2012

(2013) Ho Bin Jang et al.   JOURNAL OF VIROLOGY

Metabolic reprogramming by viruses in the sunlit and dark ocean

(2013) Bonnie L Hurwitz et al.   GENOME BIOLOGY

PHACTS, a computational approach to classifying the lifestyle of phages

(2012) Katelyn McNair et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Complete Genome Sequence of Croceibacter Bacteriophage P2559S

(2012) Ilnam Kang et al.   JOURNAL OF VIROLOGY

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Disruption of the Termite Gut Microbiota and Its Prolonged Consequences for Fitness

(2011) Rebeca B. Rosengaus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Fifty years of attempted biological control of termites – Analysis of a failure

(2011) Thomas Chouvenc et al.   BIOLOGICAL CONTROL

Genetic diversity and colony breeding structure in native and introduced ranges of the Formosan subterranean termite, Coptotermes formosanus

(2011) Claudia Husseneder et al.   BIOLOGICAL INVASIONS

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites

(2011) Mahesh S Desai et al.   ISME Journal

Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome

(2011) David T Pride et al.   ISME Journal

Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera)

(2011) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Complete Genome Sequence of the Giant Virus OBP and Comparative Genome Analysis of the Diverse  KZ-Related Phages

(2011) A. Cornelissen et al.   JOURNAL OF VIROLOGY

Microviridae Goes Temperate: Microvirus-Related Proviruses Reside in the Genomes of Bacteroidetes

(2011) Mart Krupovic et al.   PLoS One

Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR

(2011) A. D. Tadmor et al.   SCIENCE

Genomic and Functional Analyses ofRhodococcus equiPhages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7

(2010) E. J. Summer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and Genomes of Uncultured Microbial Symbionts in the Termite Gut

(2010) Yuichi HONGOH   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phage WO of Wolbachia: lambda of the endosymbiont world

(2010) Bethany N. Kent et al.   TRENDS IN MICROBIOLOGY

Changes in Composition of Culturable Bacteria Community in the Gut of the Formosan Subterranean Termite Depending on Rearing Conditions of the Host

(2009) C. Husseneder et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Classification of Myoviridae bacteriophages using protein sequence similarity

(2009) Rob Lavigne et al.   BMC MICROBIOLOGY

Bacteriophages drive strain diversification in a marineFlavobacterium: implications for phage resistance and physiological properties

(2009) Mathias Middelboe et al.   ENVIRONMENTAL MICROBIOLOGY

Strict cospeciation of devescovinid flagellates andBacteroidalesectosymbionts in the gut of dry-wood termites (Kalotermitidae)

(2009) Mahesh S. Desai et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

(2009) Dana Willner et al.   PLoS One

Cospeciation of termite gut flagellates and their bacterial endosymbionts:Trichonymphaspecies and ‘CandidatusEndomicrobium trichonymphae’

(2008) WAKAKO IKEDA-OHTSUBO et al.   MOLECULAR ECOLOGY

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH

Genome of an Endosymbiont Coupling N2 Fixation to Cellulolysis Within Protist Cells in Termite Gut

(2008) Y. Hongoh et al.   SCIENCE

Characterization of 1706, a virulent phage from Lactococcus lactis with similarities to prophages from other Firmicutes

(2008) Josiane E. Garneau et al.   VIROLOGY