Defining the human gut host–phage network through single-cell viral tagging
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Defining the human gut host–phage network through single-cell viral tagging
Authors
Keywords
-
Journal
Nature Microbiology
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-08-06
DOI
10.1038/s41564-019-0526-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Caution in inferring viral strategies from abundance correlations in marine metagenomes
- (2019) Hend Alrasheed et al. Nature Communications
- Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria
- (2019) Kaitlyn E. Kortright et al. Cell Host & Microbe
- (Ph)ighting Phages: How Bacteria Resist Their Parasites
- (2019) Jakob T. Rostøl et al. Cell Host & Microbe
- Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales
- (2019) Soo Jen Low et al. Nature Microbiology
- A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments
- (2018) Jacob H. Munson-McGee et al. ISME Journal
- GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
- (2018) Joel A Boyd et al. NUCLEIC ACIDS RESEARCH
- Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes
- (2018) Jeffrey K. Cornuault et al. Microbiome
- Murine colitis reveals a disease-associated bacteriophage community
- (2018) Breck A. Duerkop et al. Nature Microbiology
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- Molecular and Evolutionary Determinants of Bacteriophage Host Range
- (2018) Patrick A. de Jonge et al. TRENDS IN MICROBIOLOGY
- Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome
- (2018) Geoffrey D. Hannigan et al. mBio
- Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean
- (2018) Hagay Enav et al. Nature Communications
- ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
- (2018) Andrey N. Shkoporov et al. Nature Communications
- Oxidative stress in the oral cavity is driven by individual-specific bacterial communities
- (2018) Mária Džunková et al. npj Biofilms and Microbiomes
- Phage mobility is a core determinant of phage–bacteria coexistence in biofilms
- (2017) Matthew Simmons et al. ISME Journal
- Single-virus genomics reveals hidden cosmopolitan and abundant viruses
- (2017) Francisco Martinez-Hernandez et al. Nature Communications
- Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
- (2017) Ramunas Stepanauskas et al. Nature Communications
- Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics
- (2017) Masahito Hosokawa et al. Scientific Reports
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
- (2017) Martial Marbouty et al. Science Advances
- Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing
- (2017) Mathis Hjort Hjelmsø et al. PLoS One
- Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
- (2016) François Enault et al. ISME Journal
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation
- (2016) Christel Chehoud et al. mBio
- Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
- (2016) David Burstein et al. Nature Communications
- Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics
- (2016) Christian Rinke et al. PeerJ
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- (2015) Jessica M Labonté et al. ISME Journal
- Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
- (2015) Simon Roux et al. eLife
- Direct sequencing of human gut virome fractions obtained by flow cytometry
- (2015) Mária Džunková et al. Frontiers in Microbiology
- Wiretapping into microbial interactions by single cell genomics
- (2015) Ramunas Stepanauskas Frontiers in Microbiology
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions
- (2014) Arun M. Nanda et al. JOURNAL OF BACTERIOLOGY
- Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
- (2014) Li Deng et al. NATURE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
- (2014) Christian Rinke et al. Nature Protocols
- Host lifestyle affects human microbiota on daily timescales
- (2014) Lawrence A David et al. GENOME BIOLOGY
- Marseillevirus-Like Virus Recovered From Blood Donated by Asymptomatic Humans
- (2013) Nikolay Popgeorgiev et al. JOURNAL OF INFECTIOUS DISEASES
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Understanding Bacteriophage Specificity in Natural Microbial Communities
- (2013) Britt Koskella et al. Viruses-Basel
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
- (2012) L. Deng et al. mBio
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
- (2011) Nabil-Fareed Alikhan et al. BMC GENOMICS
- Ecology drives a global network of gene exchange connecting the human microbiome
- (2011) Chris S. Smillie et al. NATURE
- Statistical structure of host-phage interactions
- (2011) C. O. Flores et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR
- (2011) A. D. Tadmor et al. SCIENCE
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
- (2007) Rotem Sorek et al. NATURE REVIEWS MICROBIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started