Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

(2016) Cristina Howard-Varona et al.   ISME Journal

Variably lytic infection dynamics of largeBacteroidetespodovirus phi38:1 against twoCellulophaga balticahost strains

(2015) Vinh T. Dang et al.   ENVIRONMENTAL MICROBIOLOGY

Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton

(2015) Jessica M Labonté et al.   ISME Journal

Rising to the challenge: accelerated pace of discovery transforms marine virology

(2015) Jennifer R. Brum et al.   NATURE REVIEWS MICROBIOLOGY

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

(2015) Simon Roux et al.   eLife

What difference does it make if viruses are strain-, rather than species-specific?

(2015) T. Frede Thingstad et al.   Frontiers in Microbiology

Isolation of Phages for Phage Therapy: A Comparison of Spot Tests and Efficiency of Plating Analyses for Determination of Host Range and Efficacy

(2015) Mohammadali Khan Mirzaei et al.   PLoS One

Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity

(2014) James Murphy et al.   BMC GENOMICS

Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera

(2014) Karin Holmfeldt et al.   ENVIRONMENTAL MICROBIOLOGY

Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome

(2014) Bonnie L Hurwitz et al.   ISME Journal

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

(2014) Li Deng et al.   NATURE

Frequency and Fitness Consequences of Bacteriophage Φ6 Host Range Mutations

(2014) Brian E. Ford et al.   PLoS One

Phage Therapy as an Approach to Prevent Vibrio anguillarum Infections in Fish Larvae Production

(2014) Yolanda J. Silva et al.   PLoS One

A theoretical analysis of how strain-specific viruses can control microbial species diversity

(2014) T. F. Thingstad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unveiling viral–host interactions within the ‘microbial dark matter’

(2014) Manuel Martínez-García et al.   Nature Communications

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

(2014) Simon Roux et al.   eLife

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

(2013) Elke Allers et al.   ENVIRONMENTAL MICROBIOLOGY

Mechanisms of multi-strain coexistence in host–phage systems with nested infection networks

(2013) Luis F. Jover et al.   JOURNAL OF THEORETICAL BIOLOGY

Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

(2013) Lei Sun et al.   NATURE

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

Twelve previously unknown phage genera are ubiquitous in global oceans

(2013) K. Holmfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterising the biology of novel lytic bacteriophages infecting multidrug resistant Klebsiella pneumoniae

(2013) Agata Kęsik-Szeloch et al.   Virology Journal

CRISPR-Cas and restriction–modification systems are compatible and increase phage resistance

(2013) Marie-Ève Dupuis et al.   Nature Communications

Metabolic reprogramming by viruses in the sunlit and dark ocean

(2013) Bonnie L Hurwitz et al.   GENOME BIOLOGY

Characterization of lytic Pseudomonas aeruginosa bacteriophages via biological properties and genomic sequences

(2012) Natia Karumidze et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A method for evaluating the host range of bacteriophages using phages fluorescently labeled with 5-ethynyl-2′-deoxyuridine (EdU)

(2012) Sayaka Ohno et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Isolation and Characterisation of Lytic Bacteriophages of Klebsiella pneumoniae and Klebsiella oxytoca

(2012) Natia Karumidze et al.   CURRENT MICROBIOLOGY

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

(2012) E. E. Schadt et al.   GENOME RESEARCH

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging

(2012) L. Deng et al.   mBio

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Genomic island variability facilitates Prochlorococcus–virus coexistence

(2011) Sarit Avrani et al.   NATURE

Improved Adsorption of an Enterococcus faecalis Bacteriophage ΦEF24C with a Spontaneous Point Mutation

(2011) Jumpei Uchiyama et al.   PLoS One

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR

(2011) A. D. Tadmor et al.   SCIENCE

Efficacy of a Broad Host Range Lytic Bacteriophage Against E. coli Adhered to Urothelium

(2010) Sanna Sillankorva et al.   CURRENT MICROBIOLOGY

The first recognized epigenetic signal: DNA glucosylation of T-even bacteriophages.

(2010) Stanley Hattman   Epigenetics

Mechanisms Responsible for a  X174 Mutant's Ability To Infect Escherichia coli by Phosphorylation

(2010) J. Cox et al.   JOURNAL OF VIROLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

A flexible and efficient template format for circular consensus sequencing and SNP detection

(2010) K. J. Travers et al.   NUCLEIC ACIDS RESEARCH

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Identification and Characterization of the Phage Gene sav, Involved in Sensitivity to the Lactococcal Abortive Infection Mechanism AbiV

(2009) J. Haaber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Bacteriophages drive strain diversification in a marineFlavobacterium: implications for phage resistance and physiological properties

(2009) Mathias Middelboe et al.   ENVIRONMENTAL MICROBIOLOGY

Roles of viruses in the environment

(2009) Forest Rohwer et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation and Characterization of Bacteriophages Infecting the Fish Pathogen Flavobacterium psychrophilum

(2008) A. R. Stenholm et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic evolution in a virus under specific selection for host recognition

(2008) Kim M. Pepin et al.   INFECTION GENETICS AND EVOLUTION

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE