Metagenomic Analysis of Microbiome in Colon Tissue from Subjects with Inflammatory Bowel Diseases Reveals Interplay of Viruses and Bacteria

Functional Impacts of the Intestinal Microbiome in the Pathogenesis of Inflammatory Bowel Disease

(2015) Jennifer Li et al.   INFLAMMATORY BOWEL DISEASES

Metabolic Alterations to the Mucosal Microbiota in Inflammatory Bowel Disease

(2014) Michael Davenport et al.   INFLAMMATORY BOWEL DISEASES

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice

(2014) Robert H. Yolken et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enteric bacteria promote human and mouse norovirus infection of B cells

(2014) M. K. Jones et al.   SCIENCE

Identification of Hepatotropic Viruses from Plasma Using Deep Sequencing: A Next Generation Diagnostic Tool

(2013) John Law et al.   PLoS One

Rapid evolution of the human gut virome

(2013) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Study of the Viral and Microbial Communities Associated With Crohn’s Disease: A Metagenomic Approach

(2013) Vicente Pérez-Brocal et al.   Clinical and Translational Gastroenterology

A metagenomic insight into our gut's microbiome

(2012) Patricia Lepage et al.   GUT

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota

(2011) María José Gosalbes et al.   PLoS One

Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine

(2010) Ken Cadwell et al.   CELL

Gut Microbiota: Metagenomics to Study Complex Ecology

(2010) A. Vacharaksa et al.   CURRENT BIOLOGY

Cytomegalovirus Infection in Patients with Active Inflammatory Bowel Disease

(2010) John J. Kim et al.   DIGESTIVE DISEASES AND SCIENCES

Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant

(2010) Parag A. Vaishampayan et al.   Genome Biology and Evolution

Epstein–Barr virus replication linked to B cell proliferation in inflamed areas of colonic mucosa of patients with inflammatory bowel disease

(2010) Sumathi Sankaran-Walters et al.   JOURNAL OF CLINICAL VIROLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

The Human Gutome: Nutrigenomics of the Host–Microbiome Interactions

(2010) Dimiter V. Dimitrov   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Transfusion transmission of highly prevalent commensal human viruses

(2010) Flavien Bernardin et al.   TRANSFUSION

Parvovirus B19 Infection and Immunosuppressed IBD-Affected Pediatricians

(2009) Mario Montanari et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Intestinal bacteria and inflammatory bowel disease

(2009) Sandra Macfarlane et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

Studying the Human Gut Microbiota in the Trans-Omics Era - Focus on Metagenomics and Metabonomics

(2009) Kieran Tuohy et al.   CURRENT PHARMACEUTICAL DESIGN

Parvovirus B19 Infection Localized in the Intestinal Mucosa and Associated with Severe Inflammatory Bowel Disease

(2009) L. Pironi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Bacterial-mucosal interactions in inflammatory bowel disease—an alliance gone bad

(2008) Maciej Chichlowski et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Host-bacteria interaction in inflammatory bowel disease

(2008) P. Knight et al.   BRITISH MEDICAL BULLETIN

Microbial Influences in Inflammatory Bowel Diseases

(2008) R. Balfour Sartor   GASTROENTEROLOGY

Metagenomics

(2008) R.D. Sleator et al.   LETTERS IN APPLIED MICROBIOLOGY

A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases

(2008) Gustavo Palacios et al.   NEW ENGLAND JOURNAL OF MEDICINE

Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma

(2008) H. Feng et al.   SCIENCE