Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses

Extensive conservation of prokaryotic ribosomal binding sites in known and novel picobirnaviruses

(2018) Siddharth R. Krishnamurthy et al.   VIROLOGY

The Broad Host Range and Genetic Diversity of Mammalian and Avian Astroviruses

(2017) Celeste Donato et al.   Viruses-Basel

Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon

(2017) Claude Kwe Yinda et al.   Emerging Microbes & Infections

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

(2017) Benjamin Bolduc et al.   PeerJ

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

(2016) Tung Gia Phan et al.   ARCHIVES OF VIROLOGY

Reassortment among picobirnaviruses found in wolves

(2016) Nádia Conceição-Neto et al.   ARCHIVES OF VIROLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic Characterization and Classification of Human and Animal Sapoviruses

(2016) Tomoichiro Oka et al.   PLoS One

The Bacterial Microbiome and Virome Milestones of Infant Development

(2016) Efrem S. Lim et al.   TRENDS IN MICROBIOLOGY

Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis

(2016) Claude Kwe Yinda et al.   Scientific Reports

Divergent Sapovirus Strains and Infection Prevalence in Wild Carnivores in the Serengeti Ecosystem: A Long-Term Study

(2016) Ximena A. Olarte-Castillo et al.   PLoS One

Human anelloviruses: an update of molecular, epidemiological and clinical aspects

(2015) Sonia Spandole et al.   ARCHIVES OF VIROLOGY

Detection and characterization of a novel human parechovirus genotype in Thailand

(2015) Watchaporn Chuchaona et al.   INFECTION GENETICS AND EVOLUTION

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond

(2015) Simona Kraberger et al.   INFECTION GENETICS AND EVOLUTION

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Evolution of the immune system in humans from infancy to old age

(2015) A. Katharina Simon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

(2015) Nádia Conceição-Neto et al.   Scientific Reports

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genetic diversity of circulating Saffold viruses in Pakistan and Afghanistan

(2014) A. Naeem et al.   JOURNAL OF GENERAL VIROLOGY

Molecular analysis of enterovirus in Cameroon by partial 5′UTR-VP4 gene sequencing reveals a high genetic diversity and frequency of infections

(2014) James Ayukepi Ayukekbong et al.   JOURNAL OF MEDICAL VIROLOGY

Hepatitis A virus and the origins of picornaviruses

(2014) Xiangxi Wang et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Metagenomic analysis of viromes of dromedary camel fecal samples reveals large number and high diversity of circoviruses and picobirnaviruses

(2014) Patrick C.Y. Woo et al.   VIROLOGY

Characterization of Enteroviruses from Non-Human Primates in Cameroon Revealed Virus Types Widespread in Humans along with Candidate New Types and Species

(2014) Serge Alain Sadeuh-Mba et al.   PLoS Neglected Tropical Diseases

Epidemiology, Phylogeny, and Evolution of Emerging EntericPicobirnavirusesof Animal Origin and Their Relationship to Human Strains

(2014) Yashpal S. Malik et al.   Biomed Research International

Temporal Response of the Human Virome to Immunosuppression and Antiviral Therapy

(2013) Iwijn De Vlaminck et al.   CELL

Monitoring of seasonality of norovirus and other enteric viruses in Cameroon by real-time PCR: an exploratory study

(2013) J. A. AYUKEKBONG et al.   EPIDEMIOLOGY AND INFECTION

High Similarity of Novel Orthoreovirus Detected in a Child Hospitalized with Acute Gastroenteritis to Mammalian Orthoreoviruses Found in Bats in Europe

(2013) Andrej Steyer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Shift of Enterovirus species among children in Cameroon – Identification of a new enterovirus, EV-A119

(2013) James Ayukekbong et al.   JOURNAL OF CLINICAL VIROLOGY

Torque Teno Virus in Children Who Underwent Orthotopic Liver Transplantation: New Insights About a Common Pathogen

(2013) Kathie Béland et al.   JOURNAL OF INFECTIOUS DISEASES

High Frequency and Diversity of Species C Enteroviruses in Cameroon and Neighboring Countries

(2012) Serge Alain Sadeuh-Mba et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Complete Genome Sequence of a Novel Type of Human Parechovirus Strain Reveals Natural Recombination Events

(2012) Guangming Sun et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identification of Mammalian Orthoreovirus Type 3 in Italian Bats

(2012) D. Lelli et al.   Zoonoses and Public Health

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

An automated genotyping tool for enteroviruses and noroviruses

(2011) A. Kroneman et al.   JOURNAL OF CLINICAL VIROLOGY

Enteric viruses in healthy children in cameroon: Viral load and genotyping of norovirus strains

(2011) James Ayukekbong et al.   JOURNAL OF MEDICAL VIROLOGY

Norovirus Regulation of the Innate Immune Response and Apoptosis Occurs via the Product of the Alternative Open Reading Frame 4

(2011) Nora McFadden et al.   PLoS Pathogens

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Progress and barriers for the control of diarrhoeal disease

(2010) Mathuram Santosham et al.   LANCET

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination

(2009) C. Tolf et al.   JOURNAL OF GENERAL VIROLOGY

A Novel Picornavirus Associated with Gastroenteritis

(2009) L. Li et al.   JOURNAL OF VIROLOGY

New tools for the study and direct surveillance of viral pathogens in water

(2008) Albert Bosch et al.   CURRENT OPINION IN BIOTECHNOLOGY

Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections

(2008) C. Y. Chiu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a novel picornavirus related to cosaviruses in a child with acute diarrhea

(2008) Lori R Holtz et al.   Virology Journal