Gut microbiota-mediated pesticide toxicity in humans: Methodological issues and challenges in the risk assessment of pesticides

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

(2020) Kyle D. Brumfield et al.   PLoS One

Interaction between microbiota and immunity in health and disease

(2020) Danping Zheng et al.   CELL RESEARCH

Endocrine Disruptors in Food: Impact on Gut Microbiota and Metabolic Diseases

(2020) Yolanda Gálvez-Ontiveros et al.   Nutrients

Beyond Just Bacteria: Functional Biomes in the Gut Ecosystem Including Virome, Mycobiome, Archaeome and Helminths

(2020) Ravichandra Vemuri et al.   Microorganisms

Organophosphorus pesticide chlorpyrifos intake promotes obesity and insulin resistance through impacting gut and gut microbiota

(2019) Yiran Liang et al.   Microbiome

Glyphosate and glyphosate‐based herbicide exposure during the peripartum period affects maternal brain plasticity, maternal behaviour and microbiome

(2019) Julie Dechartres et al.   JOURNAL OF NEUROENDOCRINOLOGY

Gut microbiota: An underestimated and unintended recipient for pesticide-induced toxicity

(2019) Xianling Yuan et al.   CHEMOSPHERE

Impacts of Penconazole and Its Enantiomers Exposure on Gut Microbiota and Metabolic Profiles in Mice

(2019) Zhiyuan Meng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Intestinal dysbiosis and necrotizing enterocolitis: assessment for causality using Bradford Hill criteria

(2019) Jennifer B. Fundora et al.   PEDIATRIC RESEARCH

Human Virome and Disease: High-Throughput Sequencing for Virus Discovery, Identification of Phage-Bacteria Dysbiosis and Development of Therapeutic Approaches with Emphasis on the Human Gut

(2019) Tasha M. Santiago-Rodriguez et al.   Viruses-Basel

The fungicide azoxystrobin perturbs the gut microbiota community and enriches antibiotic resistance genes in Enchytraeus crypticus

(2019) Qi Zhang et al.   ENVIRONMENT INTERNATIONAL

Provision of Lipid-Based Nutrient Supplements to Mothers During Pregnancy and 6 Months Postpartum and to Their Infants from 6 to 18 Months Promotes Infant Gut Microbiota Diversity at 18 Months of Age but Not Microbiota Maturation in a Rural Malawian Setting: Secondary Outcomes of a Randomized Trial

(2019) Arox W Kamng'ona et al.   JOURNAL OF NUTRITION

Microbiota and organophosphates

(2019) Pablo Roman et al.   NEUROTOXICOLOGY

Gut microbiota and neurological effects of glyphosate

(2019) Lola Rueda-Ruzafa et al.   NEUROTOXICOLOGY

Can dynamic in vitro digestion systems mimic the physiological reality?

(2018) D. Dupont et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Commensal Koch's postulates: establishing causation in human microbiota research

(2018) B Anne Neville et al.   CURRENT OPINION IN MICROBIOLOGY

Glyphosate has limited short-term effects on commensal bacterial community composition in the gut environment due to sufficient aromatic amino acid levels

(2018) Lene Nørby Nielsen et al.   ENVIRONMENTAL POLLUTION

Exposure to the fungicide propamocarb causes gut microbiota dysbiosis and metabolic disorder in mice

(2018) Sisheng Wu et al.   ENVIRONMENTAL POLLUTION

Chronic chlorpyrifos exposure elicits diet-specific effects on metabolism and the gut microbiome in rats

(2018) Bing Fang et al.   FOOD AND CHEMICAL TOXICOLOGY

Phytochemicals That Influence Gut Microbiota as Prophylactics and for the Treatment of Obesity and Inflammatory Diseases

(2018) Lucrecia Carrera-Quintanar et al.   MEDIATORS OF INFLAMMATION

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Glyphosate based- herbicide exposure affects gut microbiota, anxiety and depression-like behaviors in mice

(2018) Yassine Aitbali et al.   NEUROTOXICOLOGY AND TERATOLOGY

Gut microbiota in kidney disease and hypertension

(2018) C. Antza et al.   PHARMACOLOGICAL RESEARCH

Gut Microbiota Dysfunction as Reliable Non-invasive Early Diagnostic Biomarkers in the Pathophysiology of Parkinson's Disease: A Critical Review

(2018) Arun T Nair et al.   Journal of Neurogastroenterology and Motility

Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling

(2018) Garold Fuks et al.   Microbiome

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cesarean Delivery May Affect the Early Biodiversity of Intestinal Bacteria

(2018) Giacomo Biasucci et al.   JOURNAL OF NUTRITION

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems

(2018) Clémence Defois et al.   Scientific Reports

Causality in dietary interventions—building a case for gut microbiota

(2018) Yan Y. Lam et al.   Genome Medicine

Chlorpyrifos disturbs hepatic metabolism associated with oxidative stress and gut microbiota dysbiosis in adult zebrafish

(2018) Xiaoyu Wang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Organochloride pesticides modulated gut microbiota and influenced bile acid metabolism in mice

(2017) Qian Liu et al.   ENVIRONMENTAL POLLUTION

Effects of environmental pollutants on gut microbiota

(2017) Yuanxiang Jin et al.   ENVIRONMENTAL POLLUTION

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

Moving beyond microbiome-wide associations to causal microbe identification

(2017) Neeraj K. Surana et al.   NATURE

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Chemical transformation of xenobiotics by the human gut microbiota

(2017) Nitzan Koppel et al.   SCIENCE

The infant gut bacterial microbiota and risk of pediatric asthma and allergic diseases

(2017) Christine C. Johnson et al.   Translational Research

Gut Microbiota, Endocrine-Disrupting Chemicals, and the Diabetes Epidemic

(2017) Ganesan Velmurugan et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Microbiota-gut-brain axis and the central nervous system

(2017) Xiqun Zhu et al.   Oncotarget

Neonicotinoid-induced pathogen susceptibility is mitigated by Lactobacillus plantarum immune stimulation in a Drosophila melanogaster model

(2017) Brendan A. Daisley et al.   Scientific Reports

Probiotic Lactobacillus rhamnosus Reduces Organophosphate Pesticide Absorption and Toxicity to Drosophila melanogaster

(2016) Mark Trinder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Human Oral Buccal Microbiomes Are Associated with Farmworker Status and Azinphos-Methyl Agricultural Pesticide Exposure

(2016) Ian B. Stanaway et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The mode of delivery affects the diversity and colonization pattern of the gut microbiota during the first year of infants' life: a systematic review

(2016) Erigene Rutayisire et al.   BMC GASTROENTEROLOGY

Oral imazalil exposure induces gut microbiota dysbiosis and colonic inflammation in mice

(2016) Cuiyuan Jin et al.   CHEMOSPHERE

Effects of chlorpyrifos on the gut microbiome and urine metabolome in mouse (Mus musculus)

(2016) Yanping Zhao et al.   CHEMOSPHERE

Koch's postulates, microbial dysbiosis and inflammatory bowel disease

(2016) V.P. Singh et al.   CLINICAL MICROBIOLOGY AND INFECTION

Exposure to pesticides and diabetes: A systematic review and meta-analysis

(2016) Evangelos Evangelou et al.   ENVIRONMENT INTERNATIONAL

Changes on fecal microbiota in rats exposed to permethrin during postnatal development

(2016) Cinzia Nasuti et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Changes in Composition and Function of Human Intestinal Microbiota Exposed to Chlorpyrifos in Oil as Assessed by the SHIME® Model

(2016) Julie Reygner et al.   International Journal of Environmental Research and Public Health

Revised Estimates for the Number of Human and Bacteria Cells in the Body

(2016) Ron Sender et al.   PLOS BIOLOGY

Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures

(2016) Madhavi L. Kakumanu et al.   Frontiers in Microbiology

The gut microbiota: a major player in the toxicity of environmental pollutants?

(2016) Sandrine P Claus et al.   npj Biofilms and Microbiomes

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Gut microbiota and obesity

(2015) Philippe Gérard   CELLULAR AND MOLECULAR LIFE SCIENCES

Current and Past Strategies for Bacterial Culture in Clinical Microbiology

(2015) Jean-Christophe Lagier et al.   CLINICAL MICROBIOLOGY REVIEWS

How informative is the mouse for human gut microbiota research?

(2015) T. L. A. Nguyen et al.   Disease Models & Mechanisms

Correlations of Gut Microbial Community Shift with Hepatic Damage and Growth Inhibition of Carassius auratus Induced by Pentachlorophenol Exposure

(2015) Haifeng Kan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fecal microbiota analysis: an overview of sample collection methods and sequencing strategies

(2015) Vincent Thomas et al.   Future Microbiology

Xenobiotics: Interaction with the Intestinal Microflora

(2015) Kun Lu et al.   ILAR JOURNAL

Development of human colonic microbiota in the computer-controlled dynamic SIMulator of the GastroIntestinal tract SIMGI

(2015) Elvira Barroso et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Environmental pollutants as risk factors for neurodegenerative disorders: Alzheimer and Parkinson diseases

(2015) Miguel Chin-Chan et al.   Frontiers in Cellular Neuroscience

Changes in Gut Microbiota May Be Early Signs of Liver Toxicity Induced by Epoxiconazole in Rats

(2015) Cheng Xu et al.   CHEMOTHERAPY

Changes in Gut Microbiota in Rats Fed a High Fat Diet Correlate with Obesity-Associated Metabolic Parameters

(2015) Virginie Lecomte et al.   PLoS One

Dietary effects on human gut microbiome diversity

(2014) Zhenjiang Xu et al.   BRITISH JOURNAL OF NUTRITION

The Influence of Glyphosate on the Microbiota and Production of Botulinum Neurotoxin During Ruminal Fermentation

(2014) Wagis Ackermann et al.   CURRENT MICROBIOLOGY

Challenges and Research Needs for Risk Assessment of Pesticides for Registration in Africa

(2014) W. Utembe et al.   HUMAN AND ECOLOGICAL RISK ASSESSMENT

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

(2014) Daniel P Cariveau et al.   ISME Journal

The contributory role of gut microbiota in cardiovascular disease

(2014) W.H. Wilson Tang et al.   JOURNAL OF CLINICAL INVESTIGATION

Intestinal Microbiota-Kidney Cross Talk in Acute Kidney Injury and Chronic Kidney Disease

(2014) Sanjeev Noel et al.   NEPHRON CLINICAL PRACTICE

Impact of the gut microbiota on the development of obesity and type 2 diabetes mellitus

(2014) Isabel Moreno-Indias et al.   Frontiers in Microbiology

An introduction to the analysis of shotgun metagenomic data

(2014) Thomas J. Sharpton   Frontiers in Plant Science

Far from the Eyes, Close to the Heart: Dysbiosis of Gut Microbiota and Cardiovascular Consequences

(2014) Matteo Serino et al.   Current Cardiology Reports

The human intestinal microbiome at extreme ages of life. Dietary intervention as a way to counteract alterations

(2014) Nuria Salazar et al.   Frontiers in Genetics

Next-generation sequencing technologies and their impact on microbial genomics

(2013) B. M. Forde et al.   Briefings in Functional Genomics

Assessment of bacterial diversity in breast milk using culture-dependent and culture-independent approaches

(2013) Ted Jost et al.   BRITISH JOURNAL OF NUTRITION

Low gut microbiota diversity in early infancy precedes asthma at school age

(2013) T. R. Abrahamsson et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Dietary protein metabolism by gut microbiota and its consequences for chronic kidney disease patients

(2013) Denise Mafra et al.   Future Microbiology

Biological Importance and Statistical Significance

(2013) David P. Lovell   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Gut Microbiome, Kidney Disease, and Targeted Interventions

(2013) A. Ramezani et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

The Approach to Sample Acquisition and Its Impact on the Derived Human Fecal Microbiome and VOC Metabolome

(2013) Robin D. Couch et al.   PLoS One

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

(2013) Falk Hildebrand et al.   GENOME BIOLOGY

The microbiome as a human organ

(2012) F. Baquero et al.   CLINICAL MICROBIOLOGY AND INFECTION

The Effect of Glyphosate on Potential Pathogens and Beneficial Members of Poultry Microbiota In Vitro

(2012) Awad A. Shehata et al.   CURRENT MICROBIOLOGY

Total diet study on pesticide residues in France: Levels in food as consumed and chronic dietary risk to consumers

(2012) Alexandre Nougadère et al.   ENVIRONMENT INTERNATIONAL

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Gut microbiota and diabetes: from pathogenesis to therapeutic perspective

(2011) Rémy Burcelin et al.   ACTA DIABETOLOGICA

Microbiota profile in feces of breast- and formula-fed newborns by using fluorescence in situ hybridization (FISH)

(2011) Eugenia Bezirtzoglou et al.   ANAEROBE

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut microbiome, obesity, and metabolic dysfunction

(2011) Herbert Tilg et al.   JOURNAL OF CLINICAL INVESTIGATION

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Associations among Organochlorine Pesticides, Methanobacteriales, and Obesity in Korean Women

(2011) Hae-Sook Lee et al.   PLoS One

Association between environmental exposure to pesticides and neurodegenerative diseases

(2011) Tesifón Parrón et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Effects of the gut microbiota on obesity and glucose homeostasis

(2011) Thomas Greiner et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Strong associations between low-dose organochlorine pesticides and type 2 diabetes in Korea

(2010) H.-K. Son et al.   ENVIRONMENT INTERNATIONAL

Implications of the exposome for exposure science

(2010) Stephen M Rappaport   Journal of Exposure Science and Environmental Epidemiology

Obesity and Persistent Organic Pollutants: Possible Obesogenic Effect of Organochlorine Pesticides and Polychlorinated Biphenyls

(2010) Eveline Dirinck et al.   Obesity

Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

(2010) Nadja Larsen et al.   PLoS One

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiota in obesity and metabolic disorders

(2010) Yolanda Sanz et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Risk assessment of mixtures of pesticides. Current approaches and future strategies

(2009) Trine Klein Reffstrup et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

The gastrointestinal microbiota as a site for the biotransformation of drugs

(2008) Tiago Sousa et al.   INTERNATIONAL JOURNAL OF PHARMACEUTICS

A weight of evidence approach to causal inference

(2008) Gerard Swaen et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Caenorhabditis elegans: An Emerging Model in Biomedical and Environmental Toxicology

(2008) Maxwell C. K. Leung et al.   TOXICOLOGICAL SCIENCES