Molecular Aspects of Regeneration Mechanisms in Holothurians

Transcriptomic analysis of early stages of intestinal regeneration in Holothuria glaberrima

(2021) David J. Quispe-Parra et al.   Scientific Reports

The Eupentacta fraudatrix transcriptome provides insights into regulation of cell transdifferentiation

(2020) Alexey V. Boyko et al.   Scientific Reports

Identification and characterization of a novel short-type peptidoglycan recognition protein in Apostichopus japonicus

(2020) Zhenguo Hu et al.   FISH & SHELLFISH IMMUNOLOGY

The Immunocytochemical Identification of PIWI-Positive Cells during the Recovery of a Coelomocyte Population after Evisceration in the Holothurian Eupentacta fraudatrix (Djakonov et Baranova, 1958) (Holothuroidea: Dendrochirota)

(2020) E. G. Zavalnaya et al.   Russian Journal of Marine Biology

Organoid-based modeling of intestinal development, regeneration, and repair

(2020) Joep Sprangers et al.   CELL DEATH AND DIFFERENTIATION

Wnt Signaling Pathway Linked to Intestinal Regeneration via Evolutionary Patterns and Gene Expression in the Sea Cucumber Apostichopus japonicus

(2019) Jianbo Yuan et al.   Frontiers in Genetics

Acoel genome reveals the regulatory landscape of whole-body regeneration

(2019) Andrew R. Gehrke et al.   SCIENCE

Survivin at a glance

(2019) Sally P. Wheatley et al.   JOURNAL OF CELL SCIENCE

Metalloproteinase inhibitor GM6001 delays regeneration in holothurians

(2019) I.Yu. Dolmatov et al.   TISSUE & CELL

Insights into intestinal regeneration signaling mechanisms

(2019) Samir A. Bello et al.   DEVELOPMENTAL BIOLOGY

SOX11 and SOX4 drive the reactivation of an embryonic gene program during murine wound repair

(2019) Qi Miao et al.   Nature Communications

Retinoic Acid Signaling Is Associated with Cell Proliferation, Muscle Cell Dedifferentiation, and Overall Rudiment Size during Intestinal Regeneration in the Sea Cucumber, Holothuria glaberrima

(2019) Jorge Viera-Vera et al.   Biomolecules

Retinoic Acid Signaling Regulates the Metamorphosis of Feather Stars (Crinoidea, Echinodermata): Insight into the Evolution of the Animal Life Cycle

(2019) Shumpei Yamakawa et al.   Biomolecules

Overlapping functions of Krüppel-like factor family members: targeting multiple transcription factors to maintain the naïve pluripotency of mouse embryonic stem cells

(2018) Mariko Yamane et al.   DEVELOPMENT

Regulation of growth, intestinal microbiota, non-specific immune response and disease resistance of sea cucumber Apostichopus japonicus (Selenka) in biofloc systems

(2018) Jinghua Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative expression analysis of immune-related factors in the sea cucumber Apostichopus japonicus

(2018) Jingwei Jiang et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular characterization and gene expression patterns of retinoid receptors, in normal and regenerating tissues of the sea cucumber, Holothuria glaberrima

(2018) Jorge Viera-Vera et al.   GENE

Transdifferentiation of type II alveolar epithelial cells induces reactivation of dormant tumor cells by enhancing TGF-β1/SNAI2 signaling

(2018) Yuanhong Zhou et al.   ONCOLOGY REPORTS

Molecular mechanisms of fission in echinoderms: Transcriptome analysis

(2018) Igor Yu. Dolmatov et al.   PLoS One

Comparative Phospho- and Acetyl Proteomics Analysis of Posttranslational Modifications Regulating Intestine Regeneration in Sea Cucumbers

(2018) Lina Sun et al.   Frontiers in Physiology

Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

(2018) Lenka Kalinkova et al.   BMC CANCER

The mesentery as the epicenter for intestinal regeneration

(2018) José E. García-Arrarás et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Reserve Stem Cells in Intestinal Homeostasis and Injury

(2018) Eric D. Bankaitis et al.   GASTROENTEROLOGY

Lead Induces Different Responses of Two Subpopulations of Phagocytes in the Holothurian Eupentacta fraudatrix

(2018) Lyudmila S. Dolmatova et al.   Journal of Ocean University of China

Melanotransferrin: New Homolog Genes and Their Differential Expression during Intestinal Regeneration in the Sea Cucumber Holothuria glaberrima

(2017) Josué Hernández-Pasos et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Molecular phylogeny of extant Holothuroidea (Echinodermata)

(2017) Allison K. Miller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Krüppel-like factors compete for promoters and enhancers to fine-tune transcription

(2017) Melissa D. Ilsley et al.   NUCLEIC ACIDS RESEARCH

Wnt and frizzled expression during regeneration of internal organs in the holothurian Eupentacta fraudatrix

(2017) Alexander S. Girich et al.   WOUND REPAIR AND REGENERATION

The sea cucumber genome provides insights into morphological evolution and visceral regeneration

(2017) Xiaojun Zhang et al.   PLOS BIOLOGY

Regeneration of the digestive system in the crinoid Himerometra robustipinna occurs by transdifferentiation of neurosecretory-like cells

(2017) Nadezhda V. Kalacheva et al.   PLoS One

Extracellular Reactive Oxygen Species Drive Apoptosis-Induced Proliferation via Drosophila Macrophages

(2016) Caitlin E. Fogarty et al.   CURRENT BIOLOGY

The emerging role of GATA transcription factors in development and disease

(2016) Marjolein HFM Lentjes et al.   EXPERT REVIEWS IN MOLECULAR MEDICINE

A Proteoglycan-Like Molecule Offers Insights Into Ground Substance Changes During Holothurian Intestinal Regeneration

(2016) Gabriel E. Vázquez-Vélez et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Anterior regeneration after fission in the holothurianCladolabes schmeltzii(Dendrochirotida: Holothuroidea)

(2016) Yaroslav O. Kamenev et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Hox genes and animal regeneration

(2016) E. L. Novikova et al.   Russian Journal of Developmental Biology

Mel-18 negatively regulates stem cell-like properties through downregulation of miR-21 in gastric cancer

(2016) Xiao-Feng Wang et al.   Oncotarget

Fibrillins in Tendon

(2016) Betti Giusti et al.   Frontiers in Aging Neuroscience

Two FGFRL-Wnt circuits organize the planarian anteroposterior axis

(2016) M Lucila Scimone et al.   eLife

LIM Domain Only 2 Regulates Endothelial Proliferation, Angiogenesis, and Tissue Regeneration

(2016) Shu Meng et al.   Journal of the American Heart Association

Microscopic Anatomy of the Digestive System in Normal and Regenerating Specimens of the Brittlestar Amphipholis kochii

(2016) Lidia T. Frolova et al.   BIOLOGICAL BULLETIN

Gut Regeneration in Holothurians: A Snapshot of Recent Developments

(2016) V. S. Mashanov et al.   BIOLOGICAL BULLETIN

Energy Expenditure Associated With Softening and Stiffening of Echinoderm Connective Tissue

(2016) Tatsuo Motokawa et al.   BIOLOGICAL BULLETIN

Myc regulates programmed cell death and radial glia dedifferentiation after neural injury in an echinoderm

(2015) Vladimir S Mashanov et al.   BMC DEVELOPMENTAL BIOLOGY

Coelomic epithelium-derived cells in visceral morphogenesis

(2015) Laura Ariza et al.   DEVELOPMENTAL DYNAMICS

Critical roles of sea cucumber C-type lectin in non-self recognition and bacterial clearance

(2015) Xiumei Wei et al.   FISH & SHELLFISH IMMUNOLOGY

Cellular responses and HSP70 expression during wound healing in Holothuria tubulosa (Gmelin, 1788)

(2015) Mirella Vazzana et al.   FISH & SHELLFISH IMMUNOLOGY

Identification and expression patterns of extracellular matrix-associated genes fibropellin-ia and tenascin involved in regeneration of sea cucumber Apostichopus japonicus

(2015) Huazhong Ba et al.   GENE

Regulation of mice liver regeneration by early growth response-1 through the GGPPS/RAS/MAPK pathway

(2015) Shanshan Lai et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

The fibrillin microfibril scaffold: A niche for growth factors and mechanosensation?

(2015) Gerhard Sengle et al.   MATRIX BIOLOGY

Posterior regeneration following fission in the holothurianCladolabes schmeltzii(Dendrochirotida: Holothuroidea)

(2015) Yaroslav O. Kamenev et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Evolution ofPrdmGenes in Animals: Insights from Comparative Genomics

(2015) Michel Vervoort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms

(2015) Ronald M. Clouse et al.   Royal Society Open Science

Transcriptomic changes during regeneration of the central nervous system in an echinoderm

(2014) Vladimir S Mashanov et al.   BMC GENOMICS

Expression of pluripotency factors in echinoderm regeneration

(2014) Vladimir S. Mashanov et al.   CELL AND TISSUE RESEARCH

The distribution of the Wnt5 protein in the tissues of the holothurian Eupentacta fraudatrix (Djakonov et Baranova, 1958) (Holothuroidea: Dendrochirotida) in the norm and during regeneration

(2014) A. S. Girich et al.   Russian Journal of Marine Biology

New data on asexual reproduction, autotomy, and regeneration in holothurians of the Order Dendrochirotida

(2014) I. Yu. Dolmatov   Russian Journal of Marine Biology

Asexual Reproduction in Holothurians

(2014) Igor Yu. Dolmatov   TheScientificWorldJOURNAL

Regulation of organogenesis and stem cell properties by T-box transcription factors

(2013) Yasuo Takashima et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Transdifferentiation and remodeling of post-embryonic C. elegans cells by a single transcription factor

(2013) M. R. Riddle et al.   DEVELOPMENT

Cloning and expression analysis of Wnt6 and Hox6 during intestinal regeneration in the sea cucumber Apostichopus japonicus

(2013) L.N. Sun et al.   GENETICS AND MOLECULAR RESEARCH

Characterization of proteolytic activities during intestinal regeneration of the sea cucumber, Holothuria glaberrima

(2013) Consuelo Pasten et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Id2 Complexes with the SNAG Domain of Snai1 Inhibiting Snai1-Mediated Repression of Integrin  4

(2013) C. Chang et al.   MOLECULAR AND CELLULAR BIOLOGY

Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers

(2013) Z. C. Zhou et al.   Molecular Ecology Resources

Restoration of anterior regeneration in a planarian with limited regenerative ability

(2013) James M. Sikes et al.   NATURE

Loss of the polycomb protein Mel-18 enhances the epithelial–mesenchymal transition by ZEB1 and ZEB2 expression through the downregulation of miR-205 in breast cancer

(2013) J-Y Lee et al.   ONCOGENE

Proteases from the Regenerating Gut of the Holothurian Eupentacta fraudatrix

(2013) Nina E. Lamash et al.   PLoS One

Multiple functions of the noncanonical Wnt pathway

(2013) Eva Gómez-Orte et al.   TRENDS IN GENETICS

The Role of Ryk and Ror Receptor Tyrosine Kinases in Wnt Signal Transduction

(2013) J. Green et al.   Cold Spring Harbor Perspectives in Biology

Sustained production of ROS triggers compensatory proliferation and is required for regeneration to proceed

(2013) Carole Gauron et al.   Scientific Reports

Molecular Insight into the Association Between Cartilage Regeneration and Ear Wound Healing in Genetic Mouse Models: Targeting New Genes in Regeneration

(2013) Muhammad Farooq Rai et al.   G3-Genes Genomes Genetics

Growth, metabolism and immune responses to evisceration and the regeneration of viscera in sea cucumber, Apostichopus japonicus

(2012) Yuanqi Zang et al.   AQUACULTURE

DNA methylation is associated with transcription of Snail and Slug genes

(2012) Ying Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Activation of germline-specific genes is required for limb regeneration in the Mexican axolotl

(2012) Wei Zhu et al.   DEVELOPMENTAL BIOLOGY

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Cloning and characterization of a trypsin-like serine protease gene, a novel regeneration-related gene from Apostichopus japonicus

(2012) Zhe Yuan et al.   GENE

The evolution of metazoan extracellular matrix

(2012) Richard O. Hynes   JOURNAL OF CELL BIOLOGY

Matrix Metalloproteinases in a Sea Urchin Ligament with Adaptable Mechanical Properties

(2012) Ana R. Ribeiro et al.   PLoS One

Asexual reproduction, evisceration, and regeneration in holothurians (Holothuroidea) from Nha Trang Bay of the South China Sea

(2012) I. Yu. Dolmatov et al.   Russian Journal of Marine Biology

Oxidative Stress and Antioxidant Defense

(2012) Esra Birben et al.   World Allergy Organization Journal

Alternative splicing of T-box transcription factor genes

(2011) Paige DeBenedittis et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Secreted heat shock protein-90 (Hsp90) in wound healing and cancer

(2011) Wei Li et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Cell dedifferentiation and epithelial to mesenchymal transitions during intestinal regeneration in H. glaberrima

(2011) José E García-Arrarás et al.   BMC DEVELOPMENTAL BIOLOGY

Large scale gene expression profiling during intestine and body wall regeneration in the sea cucumber Apostichopus japonicus

(2011) Lina Sun et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber visceral regeneration

(2011) Vladimir S. Mashanov et al.   GENE EXPRESSION PATTERNS

New Insights into Mutable Collagenous Tissue: Correlations between the Microstructure and Mechanical State of a Sea-Urchin Ligament

(2011) Ana R. Ribeiro et al.   PLoS One

Hidden Treasures in Stem Cells of Indeterminately Growing Bilaterian Invertebrates

(2011) Günter Vogt   Stem Cell Reviews and Reports

The Thrombospondins

(2011) J. C. Adams et al.   Cold Spring Harbor Perspectives in Biology

Overview of the Matrisome--An Inventory of Extracellular Matrix Constituents and Functions

(2011) R. O. Hynes et al.   Cold Spring Harbor Perspectives in Biology

Tenascins and the Importance of Adhesion Modulation

(2011) R. Chiquet-Ehrismann et al.   Cold Spring Harbor Perspectives in Biology

Fibronectins, Their Fibrillogenesis, and In Vivo Functions

(2011) J. E. Schwarzbauer et al.   Cold Spring Harbor Perspectives in Biology

Visceral regeneration in a sea cucumber involves extensive expression of survivin and mortalin homologs in the mesothelium

(2010) Vladimir S Mashanov et al.   BMC DEVELOPMENTAL BIOLOGY

The clinical significance of betaine, an osmolyte with a key role in methyl group metabolism

(2010) Michael Lever et al.   CLINICAL BIOCHEMISTRY

Echinoderms: Potential Model Systems for Studies on Muscle Regeneration

(2010) Jose Garcia-Arraras et al.   CURRENT PHARMACEUTICAL DESIGN

Oocyte-type linker histone B4 is required for transdifferentiation of somatic cells in vivo

(2010) Nobuyasu Maki et al.   FASEB JOURNAL

Changes in holothurian coelomocyte populations following immune stimulation with different molecular patterns

(2010) Francisco Ramírez-Gómez et al.   FISH & SHELLFISH IMMUNOLOGY

Energetic Costs of Loss and Regeneration of Arms in Stellate Echinoderms

(2010) J. M. Lawrence   INTEGRATIVE AND COMPARATIVE BIOLOGY

Role of Wnt-5A in interleukin-1β-induced matrix metalloproteinase expression in rabbit temporomandibular joint condylar chondrocytes

(2009) Xianpeng Ge et al.   ARTHRITIS AND RHEUMATISM

Regeneration of the radial nerve cord in the sea cucumber Holothuria glaberrima

(2009) José E San Miguel-Ruiz et al.   BMC DEVELOPMENTAL BIOLOGY

Gene expression profiling of intestinal regeneration in the sea cucumber

(2009) Pablo A Ortiz-Pineda et al.   BMC GENOMICS

Post-autotomy regeneration of respiratory trees in the holothurian Apostichopus japonicus (Holothuroidea, Aspidochirotida)

(2009) Igor Y. Dolmatov et al.   CELL AND TISSUE RESEARCH

Fibulins: Multiple roles in matrix structures and tissue functions

(2009) S. de Vega et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Smed-Evi/Wntless is required for  -catenin-dependent and -independent processes during planarian regeneration

(2009) T. Adell et al.   DEVELOPMENT

Apoptotic Cells Provide an Unexpected Source of Wnt3 Signaling to Drive Hydra Head Regeneration

(2009) Simona Chera et al.   DEVELOPMENTAL CELL

Expression of stem cell pluripotency factors during regeneration in newts

(2009) Nobuyasu Maki et al.   DEVELOPMENTAL DYNAMICS

Comprehensive expression analysis of all Wnt genes and their major secreted antagonists during mouse limb development and cartilage differentiation

(2009) Florian Witte et al.   GENE EXPRESSION PATTERNS

Genetic barcoding of commercial Bêche-de-mer species (Echinodermata: Holothuroidea)

(2009) SVEN UTHICKE et al.   Molecular Ecology Resources

Regeneration, repair and remembering identity: the three Rs of Hox gene expression

(2009) Kevin C. Wang et al.   TRENDS IN CELL BIOLOGY

Evidence for the evolution of tenascin and fibronectin early in the chordate lineage

(2008) Richard P. Tucker et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Regeneration of the radial nerve cord in a holothurian: A promising new model system for studying post-traumatic recovery in the adult nervous system

(2008) Vladimir S. Mashanov et al.   TISSUE & CELL