Molecular mechanisms of fission in echinoderms: Transcriptome analysis
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Title
Molecular mechanisms of fission in echinoderms: Transcriptome analysis
Authors
Keywords
Echinoderms, Collagens, Connective tissue, Proteases, Asexual reproduction, Sequence motif analysis, Transcriptome analysis, Vertebrates
Journal
PLoS One
Volume 13, Issue 4, Pages e0195836
Publisher
Public Library of Science (PLoS)
Online
2018-04-13
DOI
10.1371/journal.pone.0195836
References
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Note: Only part of the references are listed.- Molecular cloning and functional characterization of cathepsin D from sea cucumber Apostichopus japonicus
- (2017) Cuiping Yu et al. FISH & SHELLFISH IMMUNOLOGY
- Molecular phylogeny of extant Holothuroidea (Echinodermata)
- (2017) Allison K. Miller et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Wnt and frizzled expression during regeneration of internal organs in the holothurian Eupentacta fraudatrix
- (2017) Alexander S. Girich et al. WOUND REPAIR AND REGENERATION
- The sea cucumber genome provides insights into morphological evolution and visceral regeneration
- (2017) Xiaojun Zhang et al. PLOS BIOLOGY
- Long noncoding RNAs in cell differentiation and pluripotency
- (2016) Lin Chen et al. CELL AND TISSUE RESEARCH
- The extracellular matrix: Tools and insights for the “omics” era
- (2016) Alexandra Naba et al. MATRIX BIOLOGY
- Anterior regeneration after fission in the holothurianCladolabes schmeltzii(Dendrochirotida: Holothuroidea)
- (2016) Yaroslav O. Kamenev et al. MICROSCOPY RESEARCH AND TECHNIQUE
- Characterization of Ambra1 in asexual cycle of a non-vertebrate chordate, the colonial tunicate Botryllus schlosseri, and phylogenetic analysis of the protein group in Bilateria
- (2016) Fabio Gasparini et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Interfibrillar stiffening of echinoderm mutable collagenous tissue demonstrated at the nanoscale
- (2016) Jingyi Mo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metamorphosis and definitive organogenesis in the holothurian Apostichopus japonicus
- (2016) Igor Yu. Dolmatov et al. ZOOMORPHOLOGY
- Fibrillins in Tendon
- (2016) Betti Giusti et al. Frontiers in Aging Neuroscience
- Low Oxygen Consumption and High Body Content of Catch Connective Tissue Contribute to Low Metabolic Rate of Sea Cucumbers
- (2016) Nobuhiro Takemae et al. BIOLOGICAL BULLETIN
- Energy Expenditure Associated With Softening and Stiffening of Echinoderm Connective Tissue
- (2016) Tatsuo Motokawa et al. BIOLOGICAL BULLETIN
- Ultrastructural Changes Associated with Reversible Stiffening in Catch Connective Tissue of Sea Cucumbers
- (2016) Masaki Tamori et al. PLoS One
- Patterning of anteroposterior body axis displayed in the expression of Hox genes in sea cucumber Apostichopus japonicus
- (2015) Mani Kikuchi et al. DEVELOPMENT GENES AND EVOLUTION
- Gonad establishment during asexual reproduction in the annelid Pristina leidyi
- (2015) B. Duygu Özpolat et al. DEVELOPMENTAL BIOLOGY
- Identification and expression patterns of extracellular matrix-associated genes fibropellin-ia and tenascin involved in regeneration of sea cucumber Apostichopus japonicus
- (2015) Huazhong Ba et al. GENE
- Coordination between catch connective tissue and muscles through nerves in the spine joint of the sea urchin Diadema setosum
- (2015) T. Motokawa et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- New strategies for targeting matrix metalloproteinases
- (2015) Gregg B. Fields MATRIX BIOLOGY
- Membrane-type matrix metalloproteinases: Their functions and regulations
- (2015) Yoshifumi Itoh MATRIX BIOLOGY
- The fibrillin microfibril scaffold: A niche for growth factors and mechanosensation?
- (2015) Gerhard Sengle et al. MATRIX BIOLOGY
- Posterior regeneration following fission in the holothurianCladolabes schmeltzii(Dendrochirotida: Holothuroidea)
- (2015) Yaroslav O. Kamenev et al. MICROSCOPY RESEARCH AND TECHNIQUE
- The first multi-gene phylogeny of the Macrostomorpha sheds light on the evolution of sexual and asexual reproduction in basal Platyhelminthes
- (2015) Toon Janssen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Ultrastructural and biochemical characterization of mechanically adaptable collagenous structures in the edible sea urchin Paracentrotus lividus
- (2015) Alice Barbaglio et al. ZOOLOGY
- Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms
- (2015) Ronald M. Clouse et al. Royal Society Open Science
- Segment formation in Annelids: patterns, processes and evolution
- (2015) Guillaume Balavoine INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- Mechanical Properties of the Compass Depressors of the Sea-Urchin Paracentrotus lividus (Echinodermata, Echinoidea) and the Effects of Enzymes, Neurotransmitters and Synthetic Tensilin-Like Protein
- (2015) Iain C. Wilkie et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Purification and partial characterisation of a cathepsin L-like proteinase from sea cucumber (Stichopus japonicus) and its tissue distribution in body wall
- (2014) Da-Yong Zhou et al. FOOD CHEMISTRY
- Purification, Characterization, cDNA Cloning and In Vitro Expression of a Serine Proteinase from the Intestinal Tract of Sea Cucumber (Stichopus japonicus) with Collagen Degradation Activity
- (2014) Long-Jie Yan et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Softenin, a Novel Protein That Softens the Connective Tissue of Sea Cucumbers through Inhibiting Interaction between Collagen Fibrils
- (2014) Yasuhiro Takehana et al. PLoS One
- New data on asexual reproduction, autotomy, and regeneration in holothurians of the Order Dendrochirotida
- (2014) I. Yu. Dolmatov Russian Journal of Marine Biology
- Asexual Reproduction in Holothurians
- (2014) Igor Yu. Dolmatov TheScientificWorldJOURNAL
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- (2013) T. R. Cox et al. CANCER RESEARCH
- Retinoid X receptor-mediated transdifferentiation cascade in budding tunicates
- (2013) Kaz Kawamura et al. DEVELOPMENTAL BIOLOGY
- Cloning and expression analysis of Wnt6 and Hox6 during intestinal regeneration in the sea cucumber Apostichopus japonicus
- (2013) L.N. Sun et al. GENETICS AND MOLECULAR RESEARCH
- Wnt activation in nail epithelium couples nail growth to digit regeneration
- (2013) Makoto Takeo et al. NATURE
- Restoration of anterior regeneration in a planarian with limited regenerative ability
- (2013) James M. Sikes et al. NATURE
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
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- PGBD5: a neural-specific intron-containing piggyBac transposase domesticated over 500 million years ago and conserved from cephalochordates to humans
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- (2012) Limin Fu et al. BIOINFORMATICS
- Matrix Metalloproteinases, New Insights into the Understanding of Neurodegenerative Disorders
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- Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration
- (2012) Kevin G Nyberg et al. BMC GENOMICS
- The planarian P2X homolog in the regulation of asexual reproduction
- (2012) Toshihide Sakurai et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- The evolution of metazoan extracellular matrix
- (2012) Richard O. Hynes JOURNAL OF CELL BIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
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- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The Protein Precursors of Peptides That Affect the Mechanics of Connective Tissue and/or Muscle in the Echinoderm Apostichopus japonicus
- (2012) Maurice R. Elphick PLoS One
- Matrix Metalloproteinases in a Sea Urchin Ligament with Adaptable Mechanical Properties
- (2012) Ana R. Ribeiro et al. PLoS One
- Asexual reproduction, evisceration, and regeneration in holothurians (Holothuroidea) from Nha Trang Bay of the South China Sea
- (2012) I. Yu. Dolmatov et al. Russian Journal of Marine Biology
- The morphology of the digestive tract and respiratory organs of the holothurian Cladolabes schmeltzii (Holothuroidea, Dendrochirotida)
- (2012) Ya.O. Kamenev et al. TISSUE & CELL
- Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
- (2011) Ying Wang et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber visceral regeneration
- (2011) Vladimir S. Mashanov et al. GENE EXPRESSION PATTERNS
- New Insights into Mutable Collagenous Tissue: Correlations between the Microstructure and Mechanical State of a Sea-Urchin Ligament
- (2011) Ana R. Ribeiro et al. PLoS One
- Expression of Transposable Elements in Neural Tissues during Xenopus Development
- (2011) Fernando Faunes et al. PLoS One
- Cross Talk among TGF- Signaling Pathways, Integrins, and the Extracellular Matrix
- (2011) J. S. Munger et al. Cold Spring Harbor Perspectives in Biology
- The Thrombospondins
- (2011) J. C. Adams et al. Cold Spring Harbor Perspectives in Biology
- Overview of the Matrisome--An Inventory of Extracellular Matrix Constituents and Functions
- (2011) R. O. Hynes et al. Cold Spring Harbor Perspectives in Biology
- Tenascins and the Importance of Adhesion Modulation
- (2011) R. Chiquet-Ehrismann et al. Cold Spring Harbor Perspectives in Biology
- Fibronectins, Their Fibrillogenesis, and In Vivo Functions
- (2011) J. E. Schwarzbauer et al. Cold Spring Harbor Perspectives in Biology
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- A novel stiffening factor inducing the stiffest state of holothurian catch connective tissue
- (2010) A. Yamada et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- Metzincin Proteases and Their Inhibitors: Foes or Friends in Nervous System Physiology?
- (2010) S. Rivera et al. JOURNAL OF NEUROSCIENCE
- Mutations in Fibrillin-1 Cause Congenital Scleroderma: Stiff Skin Syndrome
- (2010) B. L. Loeys et al. Science Translational Medicine
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- The Collagen Family
- (2010) S. Ricard-Blum Cold Spring Harbor Perspectives in Biology
- Basement Membranes: Cell Scaffoldings and Signaling Platforms
- (2010) P. D. Yurchenco Cold Spring Harbor Perspectives in Biology
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Matrix Crosslinking Forces Tumor Progression by Enhancing Integrin Signaling
- (2009) Kandice R. Levental et al. CELL
- Fibulins: Multiple roles in matrix structures and tissue functions
- (2009) S. de Vega et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Retinoic acid and Wnt/β-catenin have complementary roles in anterior/posterior patterning embryos of the basal chordate amphioxus
- (2009) Takayuki Onai et al. DEVELOPMENTAL BIOLOGY
- Latent Transforming Growth Factor β-binding Proteins and Fibulins Compete for Fibrillin-1 and Exhibit Exquisite Specificities in Binding Sites
- (2009) Robert N. Ono et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A wound-induced Wnt expression program controls planarian regeneration polarity
- (2009) C. P. Petersen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Constraints on the evolution of asexual reproduction
- (2008) Jan Engelstädter BIOESSAYS
- Evidence for the evolution of tenascin and fibronectin early in the chordate lineage
- (2008) Richard P. Tucker et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Transposable elements and the evolution of regulatory networks
- (2008) Cédric Feschotte NATURE REVIEWS GENETICS
- SpBase: the sea urchin genome database and web site
- (2008) R. A. Cameron et al. NUCLEIC ACIDS RESEARCH
- Tissue Inhibitors of Metalloproteinases in Cell Signaling: Metalloproteinase-Independent Biological Activities
- (2008) W. G. Stetler-Stevenson Science Signaling
- Cartilage oligomeric matrix protein deficiency promotes early onset and the chronic development of collagen-induced arthritis
- (2008) Hui Geng et al. ARTHRITIS RESEARCH & THERAPY
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