Transcriptome sequencing of sea cucumber (Apostichopus japonicus) and the identification of gene-associated markers

Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts

(2013) Josep A Calduch-Giner et al.   BMC GENOMICS

Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping

(2013) Manuel Vera et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

(2013) A. Geraldes et al.   Molecular Ecology Resources

Characterization of functional mannose receptor in a continuous hybridoma cell line

(2012) David J Vigerust et al.   BMC IMMUNOLOGY

Development and characterization of 70 novel microsatellite markers for the sea cucumber (Apostichopus japonicus)

(2012) W. Peng et al.   GENETICS AND MOLECULAR RESEARCH

Genetic Differentiation among Populations and Color Variants of Sea Cucumbers (Stichopus Japonicus) from Korea and China

(2012) Jung-Ha Kang et al.   International Journal of Biological Sciences

Development and Characterization of New Single Nucleotide Polymorphism Markers from Expressed Sequence Tags in Common Carp (Cyprinus carpio)

(2012) Chuankun Zhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus (Selenka, 1867)

(2012) Huixia Du et al.   PLoS One

Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing

(2012) Steven B. Roberts et al.   PLoS One

Transcriptome Analysis and SNP Development Can Resolve Population Differentiation of Streblospio benedicti, a Developmentally Dimorphic Marine Annelid

(2012) Christina Zakas et al.   PLoS One

Sequencing and de novo Analysis of Crassostrea angulata (Fujian Oyster) from 8 Different Developing Phases Using 454 GSFlx

(2012) Ji Qin et al.   PLoS One

Genome-Wide SNP Discovery from Transcriptome of Four Common Carp Strains

(2012) Jian Xu et al.   PLoS One

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

(2011) Shikai Liu et al.   BMC GENOMICS

Addressing challenges in the production and analysis of illumina sequencing data

(2011) Martin Kircher et al.   BMC GENOMICS

Molecular characterization and expression analysis of a complement component 3 in the sea cucumber (Apostichopus japonicus)

(2011) Zunchun Zhou et al.   FISH & SHELLFISH IMMUNOLOGY

Phylogenomics reveals deep molluscan relationships

(2011) Kevin M. Kocot et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Dynamic Nucleotide Mutation Gradients and Control Region Usage in Squamate Reptile Mitochondrial Genomes

(2010) T.A. Castoe et al.   CYTOGENETIC AND GENOME RESEARCH

Expression of immune-related genes in embryos and larvae of sea cucumber Apostichopus japonicus

(2010) Aifu Yang et al.   FISH & SHELLFISH IMMUNOLOGY

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits

(2010) Shuang Chen et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Characterization of thirteen single nucleotide polymorphism markers in the sea cucumber (Apostichopus japonicus)

(2010) Wen-Jing Sun et al.   Conservation Genetics Resources

A genetic linkage map of the sea cucumber,Apostichopus japonicus(Selenka), based on AFLP and microsatellite markers

(2009) Q. Li et al.   ANIMAL GENETICS

Analysis of expressed sequence tags from body wall, intestine and respiratory tree of sea cucumber (Apostichopus japonicus)

(2009) Ai-Fu Yang et al.   AQUACULTURE

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

LPS-Induced Genes in Intestinal Tissue of the Sea Cucumber Holothuria glaberrima

(2009) Francisco Ramírez-Gómez et al.   PLoS One

Development and characterization of 38 novel EST-SSRs for the sea cucumber Apostichopus japonicus

(2009) Wei Peng et al.   Conservation Genetics Resources

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS