New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase–promoter complex

The Magic Spot: A ppGpp Binding Site on E. coli RNA Polymerase Responsible for Regulation of Transcription Initiation

(2013) Wilma Ross et al.   MOLECULAR CELL

The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex

(2013) Yuhong Zuo et al.   MOLECULAR CELL

Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation

(2012) C. W. Lennon et al.   GENES & DEVELOPMENT

Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis

(2011) Ruth M. Saecker et al.   JOURNAL OF MOLECULAR BIOLOGY

Differential stringent control of Escherichia coli rRNA promoters: effects of ppGpp, DksA and the initiating nucleotides

(2011) T. Kolmsee et al.   MICROBIOLOGY-SGM

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes

(2011) Lacramioara Bintu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

(2010) Shunsuke Tagami et al.   NATURE

One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex

(2010) T. J. Gries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A simple and optimized length estimator for digitized DNA contours

(2009) Claudio Rivetti   CYTOMETRY PART A

Promoter-specific control of E. coli RNA polymerase by ppGpp and a general transcription factor

(2009) J. W. Roberts   GENES & DEVELOPMENT

Allosteric control of Escherichia coli rRNA promoter complexes by DksA

(2009) S. T. Rutherford et al.   GENES & DEVELOPMENT

Escherichia coli DksA Binds to Free RNA Polymerase with Higher Affinity than to RNA Polymerase in an Open Complex

(2009) C. W. Lennon et al.   JOURNAL OF BACTERIOLOGY

Transcription from bacteriophage   pR promoter is regulated independently and antagonistically by DksA and ppGpp

(2009) R. Lyzen et al.   NUCLEIC ACIDS RESEARCH

Sequence-Dependent Upstream DNA–RNA Polymerase Interactions in the Open Complex with λPR and λPRM Promoters and Implications for the Mechanism of Promoter Interference

(2008) Laura Mangiarotti et al.   JOURNAL OF MOLECULAR BIOLOGY

Advances in bacterial promoter recognition and its control by factors that do not bind DNA

(2008) Shanil P. Haugen et al.   NATURE REVIEWS MICROBIOLOGY

Fine structure of the promoter-  region 1.2 interaction

(2008) S. P. Haugen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Late Steps in the Formation of E. coli RNA Polymerase—λPR Promoter Open Complexes: Characterization of Conformational Changes by Rapid [Perturbant] Upshift Experiments

(2007) Wayne S. Kontur et al.   JOURNAL OF MOLECULAR BIOLOGY