Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli

(2018) Yong Zhang et al.   mBio

Transcriptional Responses to ppGpp and DksA

(2018) Richard L. Gourse et al.   Annual Review of Microbiology

Affinity-based capture and identification of protein effectors of the growth regulator ppGpp

(2018) Boyuan Wang et al.   Nature Chemical Biology

Dissection of the molecular circuitry controlling virulence in Francisella tularensis

(2017) Bonnie J. Cuthbert et al.   GENES & DEVELOPMENT

Roles of Transcriptional and Translational Control Mechanisms in Regulation of Ribosomal Protein Synthesis in Escherichia coli

(2017) Hector L. Burgos et al.   JOURNAL OF BACTERIOLOGY

DksA and ppGpp Regulate the σ S Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP

(2017) Mary E. Girard et al.   JOURNAL OF BACTERIOLOGY

ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response

(2016) Wilma Ross et al.   MOLECULAR CELL

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Open complex scrunching before nucleotide addition accounts for the unusual transcription start site ofE. coliribosomal RNA promoters

(2016) Jared T. Winkelman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli

(2016) Navjot Singh et al.   mBio

Structural and Functional Analysis of BipA, a Regulator of Virulence in EnteropathogenicEscherichia coli

(2015) Haitian Fan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Recent functional insights into the role of (p)ppGpp in bacterial physiology

(2015) Vasili Hauryliuk et al.   NATURE REVIEWS MICROBIOLOGY

Structural and Functional Insights into the Mode of Action of a Universally Conserved Obg GTPase

(2014) Boya Feng et al.   PLOS BIOLOGY

A Proximal Promoter Element Required for Positive Transcriptional Control by Guanosine Tetraphosphate and DksA Protein during the Stringent Response

(2013) Bertil Gummesson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Magic Spot: A ppGpp Binding Site on E. coli RNA Polymerase Responsible for Regulation of Transcription Initiation

(2013) Wilma Ross et al.   MOLECULAR CELL

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

(2012) Viktoriya Shyp et al.   EMBO REPORTS

Crystal structure analysis of the translation factor RF3 (release factor 3)

(2012) Kiyohito Kihira et al.   FEBS LETTERS

Direct Regulation of GTP Homeostasis by (p)ppGpp: A Critical Component of Viability and Stress Resistance

(2012) Allison Kriel et al.   MOLECULAR CELL

Binding Mechanism of Metal⋅NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases

(2012) Richard U. Rymer et al.   STRUCTURE

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase

(2011) Usheer Kanjee et al.   EMBO JOURNAL

The dksA promoter is negatively feedback regulated by DksA and ppGpp

(2011) Pete Chandrangsu et al.   MOLECULAR MICROBIOLOGY

X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides

(2011) Michael L. Gleghorn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA

(2011) J. J. Lemke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the ‘feast to famine’ gradient in Escherichia coli

(2010) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY

Similar and Divergent Effects of ppGpp and DksA Deficiencies on Transcription in Escherichia coli

(2009) A. Aberg et al.   JOURNAL OF BACTERIOLOGY

DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade

(2009) Justin J. Lemke et al.   MOLECULAR MICROBIOLOGY

ppGpp inhibits the activity of Escherichia coli DnaG primase

(2009) Monika Maciąg et al.   PLASMID

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

(2008) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY

Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo

(2008) Anna Åberg et al.   MOLECULAR MICROBIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Advances in bacterial promoter recognition and its control by factors that do not bind DNA

(2008) Shanil P. Haugen et al.   NATURE REVIEWS MICROBIOLOGY