标题
Structural basis of ribosomal RNA transcription regulation
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-22
DOI
10.1038/s41467-020-20776-y
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fluorescence-Detected Conformational Changes in Duplex DNA in Open Complex Formation by Escherichia coli RNA Polymerase: Upstream Wrapping and Downstream Bending Precede Clamp Opening and Insertion of the Downstream Duplex
- (2020) Raashi Sreenivasan et al. BIOCHEMISTRY
- Stepwise Promoter Melting by Bacterial RNA Polymerase
- (2020) James Chen et al. MOLECULAR CELL
- UCSF ChimeraX : Structure visualization for researchers, educators, and developers
- (2020) Eric F. Pettersen et al. PROTEIN SCIENCE
- The RNA Polymerase α Subunit Recognizes the DNA Shape of the Upstream Promoter Element
- (2020) Samuel Lara-Gonzalez et al. BIOCHEMISTRY
- Structural basis for transcription initiation by bacterial ECF σ factors
- (2019) Lingting Li et al. Nature Communications
- RNA Polymerase: Step-by-Step Kinetics and Mechanism of Transcription Initiation
- (2019) Kate L. Henderson et al. BIOCHEMISTRY
- Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms
- (2019) Abhishek Mazumder et al. JOURNAL OF MOLECULAR BIOLOGY
- Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase
- (2019) Patricia Sanchez-Vazquez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription
- (2019) Sarah K Stumper et al. eLife
- Crl activates transcription by stabilizing active conformation of the master stress transcription initiation factor
- (2019) Juncao Xu et al. eLife
- E. coli TraR allosterically regulates transcription initiation by altering RNA polymerase conformation
- (2019) James Chen et al. eLife
- Cryo-EM structure ofEscherichia coliσ70RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation
- (2018) Anoop Narayanan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structures of Bacterial RNA Polymerase Complexes Reveal the Mechanism of DNA Loading and Transcription Initiation
- (2018) Robert Glyde et al. MOLECULAR CELL
- Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA
- (2018) Vadim Molodtsov et al. MOLECULAR CELL
- Transcriptional Responses to ppGpp and DksA
- (2018) Richard L. Gourse et al. Annual Review of Microbiology
- Promoter Distortion and Opening in the RNA Polymerase II Cleft
- (2018) Christian Dienemann et al. MOLECULAR CELL
- Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA
- (2018) Danil Pupov et al. NUCLEIC ACIDS RESEARCH
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
- (2017) Shawn Q Zheng et al. NATURE METHODS
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- Mechanism of transcription initiation and promoter escape byE.coliRNA polymerase
- (2017) Kate L. Henderson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fluorescence Resonance Energy Transfer Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase−λPR Promoter Complexes
- (2016) Raashi Sreenivasan et al. BIOCHEMISTRY
- Gctf: Real-time CTF determination and correction
- (2016) Kai Zhang JOURNAL OF STRUCTURAL BIOLOGY
- RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes
- (2016) Monali NandyMazumdar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Open complex scrunching before nucleotide addition accounts for the unusual transcription start site ofE. coliribosomal RNA promoters
- (2016) Jared T. Winkelman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recent functional insights into the role of (p)ppGpp in bacterial physiology
- (2015) Vasili Hauryliuk et al. NATURE REVIEWS MICROBIOLOGY
- New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase–promoter complex
- (2015) Nicola Doniselli et al. NUCLEIC ACIDS RESEARCH
- DksA regulates RNA polymerase inEscherichia colithrough a network of interactions in the secondary channel that includes Sequence Insertion 1
- (2015) Andrey Parshin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse
- (2014) Je Ko et al. BIOCHEMICAL JOURNAL
- A Proximal Promoter Element Required for Positive Transcriptional Control by Guanosine Tetraphosphate and DksA Protein during the Stringent Response
- (2013) Bertil Gummesson et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- X-ray Crystal Structure ofEscherichia coliRNA Polymerase σ70Holoenzyme
- (2013) Katsuhiko S. Murakami JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural Basis of Transcription Initiation
- (2012) Y. Zhang et al. SCIENCE
- Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
- (2011) Andrey Feklistov et al. CELL
- Joint X-ray and neutron refinement withphenix.refine
- (2010) Pavel V. Afonine et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Allosteric control of Escherichia coli rRNA promoter complexes by DksA
- (2009) S. T. Rutherford et al. GENES & DEVELOPMENT
- ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor σEinEscherichia coliby both direct and indirect mechanisms
- (2009) Alessandra Costanzo et al. MOLECULAR MICROBIOLOGY
- (p)ppGpp: Still Magical?
- (2008) Katarzyna Potrykus et al. Annual Review of Microbiology
- Fine structure of the promoter- region 1.2 interaction
- (2008) S. P. Haugen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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