Footprints of global change in marine life: Inferring past environment based on DNA methylation and gene expression marks
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Title
Footprints of global change in marine life: Inferring past environment based on DNA methylation and gene expression marks
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-12-29
DOI
10.1111/mec.15764
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Note: Only part of the references are listed.- Species-specific molecular responses of wild coral reef fishes during a marine heatwave
- (2020) Moisés A. Bernal et al. Science Advances
- Exposure of zebrafish to elevated temperature induces sex ratio shifts and alterations in the testicular epigenome of unexposed offspring
- (2020) Alejandro Valdivieso et al. ENVIRONMENTAL RESEARCH
- Thermal bottlenecks in the life cycle define climate vulnerability of fish
- (2020) Flemming T. Dahlke et al. SCIENCE
- Marine heatwaves threaten global biodiversity and the provision of ecosystem services
- (2019) Dan A. Smale et al. Nature Climate Change
- Phenotypic plasticity and epigenetics of fish: embryo temperature affects later-developing life-history traits
- (2019) B Jonsson et al. Aquatic Biology
- Fish facing global change: are early stages the lifeline?
- (2019) Marie Vagner et al. MARINE ENVIRONMENTAL RESEARCH
- Greater vulnerability to warming of marine versus terrestrial ectotherms
- (2019) Malin L. Pinsky et al. NATURE
- Epimutations in developmental genes underlie the onset of domestication in farmed European sea bass
- (2019) Dafni Anastasiadi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comparative transcriptome analysis reveals potential evolutionary differences in adaptation of temperature and body shape among four Percidae species
- (2019) Peng Xie et al. PLoS One
- A global assessment of marine heatwaves and their drivers
- (2019) Neil J. Holbrook et al. Nature Communications
- A clockwork fish: Age prediction using DNA methylation‐based biomarkers in the European seabass
- (2019) Dafni Anastasiadi et al. Molecular Ecology Resources
- Developmental phenotypic plasticity helps bridge stochastic weather events associated with climate change
- (2018) Warren Burggren JOURNAL OF EXPERIMENTAL BIOLOGY
- Similarities in temperature-dependent gene expression plasticity across timescales in threespine stickleback (Gasterosteus aculeatus )
- (2018) David C. H. Metzger et al. MOLECULAR ECOLOGY
- Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species
- (2018) Dafni Anastasiadi et al. Epigenetics & Chromatin
- Emerging risks from marine heat waves
- (2018) Thomas L. Frölicher et al. Nature Communications
- GOATOOLS: A Python library for Gene Ontology analyses
- (2018) D. V. Klopfenstein et al. Scientific Reports
- Dynamic epimarks in sex-related genes predict gonad phenotype in seabass, a fish with mixed genetic and environmental sex determination
- (2018) Dafni Anastasiadi et al. Epigenetics
- Ionizing radiation induces transgenerational effects of DNA methylation in zebrafish
- (2018) Jorke H. Kamstra et al. Scientific Reports
- Age estimation in a long-lived seabird (Ardenna tenuirostris ) using DNA methylation-based biomarkers
- (2018) R. De Paoli-Iseppi et al. Molecular Ecology Resources
- Inferring Past Environments from Ancient Epigenomes
- (2017) David Gokhman et al. MOLECULAR BIOLOGY AND EVOLUTION
- Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback ( Gasterosteus aculeatus )
- (2017) David C. H. Metzger et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Small ocean temperature increases elicit stage-dependent changes in DNA methylation and gene expression in a fish, the European sea bass
- (2017) Dafni Anastasiadi et al. Scientific Reports
- Epigenetic-induced alterations in sex-ratios in response to climate change: An epigenetic trap?
- (2016) Sofia Consuegra et al. BIOESSAYS
- Altered sex ratios in response to climate change-Who will fall into the (epigenetic) trap? (Comment on DOI 10.1002/bies.201600058)
- (2016) Francesc Piferrer BIOESSAYS
- Tissue-overlapping response of half-smooth tongue sole (Cynoglossus semilaevis) to thermostressing based on transcriptome profiles
- (2016) Li Guo et al. GENE
- Transcriptome profiling of two Iberian freshwater fish exposed to thermal stress
- (2016) Tiago Filipe Jesus et al. JOURNAL OF THERMAL BIOLOGY
- Active DNA demethylation at enhancers during the vertebrate phylotypic period
- (2016) Ozren Bogdanović et al. NATURE GENETICS
- A hierarchical approach to defining marine heatwaves
- (2016) Alistair J. Hobday et al. PROGRESS IN OCEANOGRAPHY
- Epigenetics: It's Getting Old. Past Meets Future in Paleoepigenetics
- (2016) David Gokhman et al. TRENDS IN ECOLOGY & EVOLUTION
- Evolution of Plasticity: Mechanistic Link between Development and Reversible Acclimation
- (2016) Julian E. Beaman et al. TRENDS IN ECOLOGY & EVOLUTION
- Tagging methyl-CpG-binding domain proteins reveals different spatiotemporal expression and supports distinct functions
- (2016) Kathleen H Wood et al. Epigenomics
- The Impact of External Factors on the Epigenome:In Uteroand over Lifetime
- (2016) Estela G. Toraño et al. Biomed Research International
- Genome-Wide Differences in DNA Methylation Changes in Two Contrasting Rice Genotypes in Response to Drought Conditions
- (2016) Wensheng Wang et al. Frontiers in Plant Science
- Global DNA Methylation Changes in Nile Tilapia Gonads during High Temperature-Induced Masculinization
- (2016) Li-Xue Sun et al. PLoS One
- Lasting effects of early exposure to temperature on the gonadal transcriptome at the time of sex differentiation in the European sea bass, a fish with mixed genetic and environmental sex determination
- (2015) Noelia Díaz et al. BMC GENOMICS
- Environmentally induced epigenetic transgenerational inheritance of sperm epimutations promote genetic mutations
- (2015) Michael K Skinner et al. Epigenetics
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Diagnostic and prognostic epigenetic biomarkers in cancer
- (2015) Pedro Costa-Pinheiro et al. Epigenomics
- Molecular processes of transgenerational acclimation to a warming ocean
- (2015) Heather D. Veilleux et al. Nature Climate Change
- Differential DNA Methylation Analysis without a Reference Genome
- (2015) Johanna Klughammer et al. Cell Reports
- Biomarkers of animal health: integrating nutritional ecology, endocrine ecophysiology, ecoimmunology, and geospatial ecology
- (2015) Robin W. Warne et al. Ecology and Evolution
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- jvenn: an interactive Venn diagram viewer
- (2014) Philippe Bardou et al. BMC BIOINFORMATICS
- Genomic patterns and context specific interpretation of DNA methylation
- (2014) Tuncay Baubec et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Epigenetic modification and inheritance in sexual reversal of fish
- (2014) C. Shao et al. GENOME RESEARCH
- The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes
- (2014) A. L. Teh et al. GENOME RESEARCH
- Early environment influences later performance in fishes
- (2014) B. Jonsson et al. JOURNAL OF FISH BIOLOGY
- Epigenetic estimation of age in humpback whales
- (2014) Andrea M. Polanowski et al. Molecular Ecology Resources
- Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
- (2014) Songlin Chen et al. NATURE GENETICS
- A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
- (2014) Hao Feng et al. NUCLEIC ACIDS RESEARCH
- Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
- (2014) Nicholas E. Banovich et al. PLoS Genetics
- The relationship between growth and sex differentiation in the European sea bass (Dicentrarchus labrax)
- (2013) Noelia Díaz et al. AQUACULTURE
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Transcriptomic characterization of cold acclimation in larval zebrafish
- (2013) Yong Long et al. BMC GENOMICS
- RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species
- (2013) Steve Smith et al. BMC GENOMICS
- Epigenetics of sex determination and gonadogenesis
- (2013) Francesc Piferrer DEVELOPMENTAL DYNAMICS
- The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
- (2013) Yang Liao et al. NUCLEIC ACIDS RESEARCH
- A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics
- (2013) Qiang Song et al. PLoS One
- Fantastically plastic: fish larvae equipped for a new world
- (2013) Karin Pittman et al. Reviews in Aquaculture
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- DNA methylation age of human tissues and cell types
- (2013) Steve Horvath GENOME BIOLOGY
- A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
- (2012) H. Wu et al. BIOSTATISTICS
- The Cortisol and Androgen Pathways Cross Talk in High Temperature-Induced Masculinization: The 11β-Hydroxysteroid Dehydrogenase as a Key Enzyme
- (2012) Juan Ignacio Fernandino et al. ENDOCRINOLOGY
- Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
- (2012) P. Yu et al. GENOME RESEARCH
- Epigenetics and the environment: emerging patterns and implications
- (2012) Robert Feil et al. NATURE REVIEWS GENETICS
- Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
- (2012) Yaping Liu et al. GENOME BIOLOGY
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Growth and the regulation of myotomal muscle mass in teleost fish
- (2011) I. A. Johnston et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing
- (2011) Fabienne Brenet et al. PLoS One
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- The Epigenetic promise for prostate cancer diagnosis
- (2011) Leander Van Neste et al. PROSTATE
- DNA Methylation of the Gonadal Aromatase (cyp19a) Promoter Is Involved in Temperature-Dependent Sex Ratio Shifts in the European Sea Bass
- (2011) Laia Navarro-Martín et al. PLoS Genetics
- Cloning and sequence analysis of a vasa homolog in the European sea bass (Dicentrarchus labrax): Tissue distribution and mRNA expression levels during early development and sex differentiation
- (2010) Mercedes Blázquez et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- Gilthead sea bream liver proteome altered at low temperatures by oxidative stress
- (2010) Antoni Ibarz et al. PROTEOMICS
- Balancing the effects of rearing at low temperature during early development on sex ratios, growth and maturation in the European sea bass (Dicentrarchus labrax).
- (2009) Laia Navarro-Martín et al. AQUACULTURE
- BSMAP: whole genome bisulfite sequence MAPping program
- (2009) Yuanxin Xi et al. BMC BIOINFORMATICS
- An operational definition of epigenetics
- (2009) S. L. Berger et al. GENES & DEVELOPMENT
- Thermally induced phenotypic plasticity of swimming performance in European sea bassDicentrarchus labraxjuveniles
- (2009) G. Koumoundouros et al. JOURNAL OF FISH BIOLOGY
- Identification of sea bass ( Dicentrarchus labrax) nursery areas in the north-western Mediterranean Sea
- (2009) V. Dufour et al. JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM
- ECOLOGY: Physiology and Climate Change
- (2008) H. O. Portner et al. SCIENCE
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