Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback ( Gasterosteus aculeatus )

Associating cellular epigenetic models with human phenotypes

(2017) Tuuli Lappalainen et al.   NATURE REVIEWS GENETICS

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

(2016) Taiji Kawakatsu et al.   CELL

Transgenerational effects persist down the maternal line in marine sticklebacks: gene expression matches physiology in a warming ocean

(2016) Lisa N.S. Shama et al.   Evolutionary Applications

The multivariate association between genomewide DNA methylation and climate across the range ofArabidopsis thaliana

(2016) Thomas E. Keller et al.   MOLECULAR ECOLOGY

Species-wide patterns of DNA methylation variation inQuercus lobataand their association with climate gradients

(2016) Paul F. Gugger et al.   MOLECULAR ECOLOGY

Maternal stress has divergent effects on gene expression patterns in the brains of male and female threespine stickleback

(2016) David C. H. Metzger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Plasticity: Mechanistic Link between Development and Reversible Acclimation

(2016) Julian E. Beaman et al.   TRENDS IN ECOLOGY & EVOLUTION

Global DNA methylation variations after short-term heat shock treatment in cultured microspores of Brassica napus cv. Topas

(2016) Jun Li et al.   Scientific Reports

Cold acclimation increases levels of some heat shock protein and sirtuin isoforms in threespine stickleback

(2015) Laura E. Teigen et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

What Do You Mean, “Epigenetic”?

(2015) Carrie Deans et al.   GENETICS

Bet hedging in a warming ocean: predictability of maternal environment shapes offspring size variation in marine sticklebacks

(2015) Lisa N. S. Shama   GLOBAL CHANGE BIOLOGY

Genome-Wide DNA Methylation Patterns in Wild Samples of Two Morphotypes of Threespine Stickleback (Gasterosteus aculeatus)

(2015) Gilbert Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chilling- and Freezing- Induced Alterations in Cytosine Methylation and Its Association with the Cold Tolerance of an Alpine Subnival Plant, Chorispora bungeana

(2015) Yuan Song et al.   PLoS One

DNA methylation and physio-biochemical analysis of chickpea in response to cold stress

(2015) Aida Rakei et al.   PROTOPLASMA

Adaptive plasticity and epigenetic variation in response to warming in an Alpine plant

(2015) Adrienne B. Nicotra et al.   Ecology and Evolution

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

What Do You Mean, “Epigenetic”?

(2015) Carrie Deans et al.   GENETICS

Transgenerational plasticity in marine sticklebacks: maternal effects mediate impacts of a warming ocean

(2014) Lisa N. S. Shama et al.   FUNCTIONAL ECOLOGY

Grandparental effects in marine sticklebacks: transgenerational plasticity across multiple generations

(2014) L. N. S. Shama et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Nonlinear effects of temperature on body form and developmental canalization in the threespine stickleback

(2014) D. Ramler et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Physiological plasticity increases resilience of ectothermic animals to climate change

(2014) Frank Seebacher et al.   Nature Climate Change

The Role of Methylation of DNA in Environmental Adaptation

(2013) K. B. Flores et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Temperature during embryonic development has persistent effects on metabolic enzymes in the muscle of zebrafish

(2013) M. E. Schnurr et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish

(2012) G. R. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The extended evolutionary synthesis and the role of soft inheritance in evolution

(2012) T. E. Dickins et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Thermal tolerance and the global redistribution of animals

(2012) Jennifer M. Sunday et al.   Nature Climate Change

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Thermal Performance Curves, Phenotypic Plasticity, and the Time Scales of Temperature Exposure

(2011) P. M. Schulte et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Genome-wide polymorphisms show unexpected targets of natural selection

(2011) M. H. Pespeni et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Analysis of DNA Methylation in a Three-Generation Family Reveals Widespread Genetic Influence on Epigenetic Regulation

(2011) Jason Gertz et al.   PLoS Genetics

SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures

(2010) Hong-Qiang Wang et al.   BIOINFORMATICS

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

A Study of the Influence of Sex on Genome Wide Methylation

(2010) Jingyu Liu et al.   PLoS One

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

(2009) Eva Jablonka et al.   QUARTERLY REVIEW OF BIOLOGY

Adaptive Phenotypic Plasticity in Response to Climate Change in a Wild Bird Population

(2008) A. Charmantier et al.   SCIENCE