Improving estimates of species distribution change by incorporating local trends

Bayesian spatially varying coefficient models in the spBayes R package

(2020) Andrew O. Finley et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Preparing for the future: integrating spatial ecology into ecosystem-based management

(2019) Susan K Lowerre-Barbieri et al.   ICES JOURNAL OF MARINE SCIENCE

The effect of random and density‐dependent variation in sampling efficiency on variance of abundance estimates from fishery surveys

(2019) Stan Kotwicki et al.   FISH AND FISHERIES

Sub‐regional differences in groundfish distributional responses to anomalous ocean bottom temperatures in the northeast Pacific

(2019) Lingbo Li et al.   GLOBAL CHANGE BIOLOGY

Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks

(2019) Brian C Stock et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Measuring the impact of oceanographic indices on species distribution shifts: The spatially varying effect of cold-pool extent in the eastern Bering Sea

(2019) James T. Thorson   LIMNOLOGY AND OCEANOGRAPHY

Investigating the value of including depth during spatiotemporal index standardization

(2019) Kelli F. Johnson et al.   FISHERIES RESEARCH

Interactive spatial scale effects on species distribution modeling: The case of the giant panda

(2019) Thomas Connor et al.   Scientific Reports

A geostatistical state-space model of animal densities for stream networks

(2018) Daniel J. Hocking et al.   ECOLOGICAL APPLICATIONS

Black swans in space: modelling spatiotemporal processes with extremes

(2018) Sean C. Anderson et al.   ECOLOGY

Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments

(2018) James T. Thorson   FISHERIES RESEARCH

Comparing estimates of abundance trends and distribution shifts using single- and multispecies models of fishes and biogenic habitat

(2017) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Joint dynamic species distribution models: a tool for community ordination and spatio-temporal monitoring

(2016) James T. Thorson et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

The Effects of Sub-Regional Climate Velocity on the Distribution and Spatial Extent of Marine Species Assemblages

(2016) Kristin M. Kleisner et al.   PLoS One

Model-based inference for estimating shifts in species distribution, area occupied and centre of gravity

(2016) James T. Thorson et al.   Methods in Ecology and Evolution

State-space models’ dirty little secrets: even simple linear Gaussian models can have estimation problems

(2016) Marie Auger-Méthé et al.   Scientific Reports

Using spatiotemporal species distribution models to identify temporally evolving hotspots of species co-occurrence

(2015) Eric J. Ward et al.   ECOLOGICAL APPLICATIONS

Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes

(2015) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

spBayesfor Large Univariate and Multivariate Point-Referenced Spatio-Temporal Data Models

(2015) Andrew O. Finley et al.   Journal of Statistical Software

Spatial semiparametric models improve estimates of species abundance and distribution

(2014) Andrew Olaf Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Early Warning Signals of Ecological Transitions: Methods for Spatial Patterns

(2014) Sonia Kéfi et al.   PLoS One

Marine Taxa Track Local Climate Velocities

(2013) M. L. Pinsky et al.   SCIENCE

Presence-only modelling using MAXENT: when can we trust the inferences?

(2012) Charles B. Yackulic et al.   Methods in Ecology and Evolution

Direct fitting of dynamic models using integrated nested Laplace approximations — INLA

(2011) Ramiro Ruiz-Cárdenas et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Estimation of population density by spatially explicit capture–recapture analysis of data from area searches

(2011) Murray G. Efford   ECOLOGY

Fisheries, food security, climate change, and biodiversity: characteristics of the sector and perspectives on emerging issues

(2011) J. C. Rice et al.   ICES JOURNAL OF MARINE SCIENCE

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

The roles of habitat heterogeneity in generating and maintaining biodiversity on continental margins: an introduction

(2010) Lisa A. Levin et al.   Marine Ecology-An Evolutionary Perspective

The art of modelling range-shifting species

(2010) Jane Elith et al.   Methods in Ecology and Evolution

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

Notes on survey-based spatial indicators for monitoring fish populations

(2009) Mathieu Woillez et al.   AQUATIC LIVING RESOURCES

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States

(2009) A. M. Latimer et al.   ECOLOGY LETTERS

Greenhouse gas, upwelling-favorable winds, and the future of coastal ocean upwelling ecosystems

(2009) ANDREW BAKUN et al.   GLOBAL CHANGE BIOLOGY

Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations

(2009) Håvard Rue et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Detecting range shifts from historical species occurrences: new perspectives on old data

(2009) Morgan W. Tingley et al.   TRENDS IN ECOLOGY & EVOLUTION

Improving the performance of predictive process modeling for large datasets

(2008) Andrew O. Finley et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

A HIERARCHICAL MODEL FOR SPATIAL CAPTURE–RECAPTURE DATA

(2008) J. Andrew Royle et al.   ECOLOGY

Gaussian predictive process models for large spatial data sets

(2008) Sudipto Banerjee et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

A Significant Upward Shift in Plant Species Optimum Elevation During the 20th Century

(2008) J. Lenoir et al.   SCIENCE