Comparing estimates of abundance trends and distribution shifts using single- and multispecies models of fishes and biogenic habitat

Joint dynamic species distribution models: a tool for community ordination and spatio-temporal monitoring

(2016) James T. Thorson et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

Validation and improvement of species distribution models for structure-forming invertebrates in the eastern Bering Sea with an independent survey

(2016) CN Rooper et al.   MARINE ECOLOGY PROGRESS SERIES

Model-based inference for estimating shifts in species distribution, area occupied and centre of gravity

(2016) James T. Thorson et al.   Methods in Ecology and Evolution

Validation and improvement of species distribution models for structure-forming invertebrates in the eastern Bering Sea with an independent survey

(2016) CN Rooper et al.   MARINE ECOLOGY PROGRESS SERIES

Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes

(2015) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Using latent variable models to identify large networks of species-to-species associations at different spatial scales

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Spatial factor analysis: a new tool for estimating joint species distributions and correlations in species range

(2015) James T. Thorson et al.   Methods in Ecology and Evolution

Spatial semiparametric models improve estimates of species abundance and distribution

(2014) Andrew Olaf Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Accounting for vessel effects when standardizing catch rates from cooperative surveys

(2014) James T. Thorson et al.   FISHERIES RESEARCH

Mixed effects: a unifying framework for statistical modelling in fisheries biology

(2014) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

A Statistical Model for Estimation of Fish Density Including Correlation in Size, Space, Time and between Species from Research Survey Data

(2014) J. Rasmus Nielsen et al.   PLoS One

Estimating spatio-temporal dynamics of size-structured populations

(2013) Kasper Kristensen et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

Marine Taxa Track Local Climate Velocities

(2013) M. L. Pinsky et al.   SCIENCE

A review of integrated analysis in fisheries stock assessment

(2012) Mark N. Maunder et al.   FISHERIES RESEARCH

Accounting for fish shoals in single- and multi-species survey data using mixture distribution models

(2011) James T. Thorson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Data weighting in statistical fisheries stock assessment models

(2011) R.I.C. Chris Francis   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

In order to make spatial statistics computationally feasible, we need to forget about the covariance function

(2011) Daniel Simpson et al.   ENVIRONMETRICS

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Shortspine thornyhead and rockfish (Scorpaenidae) distribution in response to substratum, biogenic structures and trawling

(2011) C Du Preez et al.   MARINE ECOLOGY PROGRESS SERIES

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Multi-species occurrence models to evaluate the effects of conservation and management actions

(2009) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

Trait-based assembly and phylogenetic structure in northeast Pacific rockfish assemblages

(2009) Travis Ingram et al.   ECOLOGY

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States

(2009) A. M. Latimer et al.   ECOLOGY LETTERS