Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes

The importance of spatial models for estimating the strength of density dependence

(2015) James T. Thorson et al.   ECOLOGY

Spatial semiparametric models improve estimates of species abundance and distribution

(2014) Andrew Olaf Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Accounting for vessel effects when standardizing catch rates from cooperative surveys

(2014) James T. Thorson et al.   FISHERIES RESEARCH

Random effect estimation of time-varying factors in Stock Synthesis

(2014) J. T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Standardizing compositional data for stock assessment

(2014) James T. Thorson   ICES JOURNAL OF MARINE SCIENCE

Estimating spatio-temporal dynamics of size-structured populations

(2013) Kasper Kristensen et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A Bayesian approach to identifying and compensating for model misspecification in population models

(2013) James T. Thorson et al.   ECOLOGY

Performance comparison between spatial interpolation and GLM/GAM in estimating relative abundance indices through a simulation study

(2013) Hao Yu et al.   FISHERIES RESEARCH

Accounting for space–time interactions in index standardization models

(2013) James T. Thorson et al.   FISHERIES RESEARCH

Implementing a science-based system for preventing overfishing and guiding sustainable fisheries in the United States

(2013) R. D. Methot et al.   ICES JOURNAL OF MARINE SCIENCE

Marine Taxa Track Local Climate Velocities

(2013) M. L. Pinsky et al.   SCIENCE

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

(2013) Benjamin M. Bolker et al.   Methods in Ecology and Evolution

Estimating species composition and quantifying uncertainty in multispecies fisheries: hierarchical Bayesian models for stratified sampling protocols with missing data

(2012) Andrew O. Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

The implications of spatially varying catchability on bottom trawl surveys of fish abundance: a proposed solution involving underwater vehicles

(2012) James T. Thorson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Measuring uncertainty in fisheries stock assessment: the delta method, bootstrap, and MCMC

(2012) Arni Magnusson et al.   FISH AND FISHERIES

Stock synthesis: A biological and statistical framework for fish stock assessment and fishery management

(2012) Richard D. Methot et al.   FISHERIES RESEARCH

Adjusting for bias due to variability of estimated recruitments in fishery assessment models

(2011) Richard D. Methot et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Data weighting in statistical fisheries stock assessment models

(2011) R.I.C. Chris Francis   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Integrating imputation and standardization of catch rate data in the calculation of relative abundance indices

(2011) Thomas R. Carruthers et al.   FISHERIES RESEARCH

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

Geostatistical inference under preferential sampling

(2010) Peter J. Diggle et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS

Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling

(2009) Noel Cressie et al.   ECOLOGICAL APPLICATIONS

Incorporating Time-Varying Catchability into Population Dynamic Stock Assessment Models

(2009) Michael J. Wilberg et al.   REVIEWS IN FISHERIES SCIENCE