Joint dynamic species distribution models: a tool for community ordination and spatio-temporal monitoring

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

Using spatiotemporal statistical models to estimate animal abundance and infer ecological dynamics from survey counts

(2015) Paul B. Conn et al.   ECOLOGICAL MONOGRAPHS

Do growing degree days predict phenology across butterfly species?

(2015) Heather L. Cayton et al.   ECOLOGY

The importance of spatial models for estimating the strength of density dependence

(2015) James T. Thorson et al.   ECOLOGY

Watershed geomorphology and snowmelt control stream thermal sensitivity to air temperature

(2015) Peter J. Lisi et al.   GEOPHYSICAL RESEARCH LETTERS

Climate change impacts on bumblebees converge across continents

(2015) J. T. Kerr et al.   SCIENCE

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Generating realistic assemblages with a joint species distribution model

(2015) David J. Harris   Methods in Ecology and Evolution

Using latent variable models to identify large networks of species-to-species associations at different spatial scales

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Spatial factor analysis: a new tool for estimating joint species distributions and correlations in species range

(2015) James T. Thorson et al.   Methods in Ecology and Evolution

Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Evaluating Temporal Consistency in Marine Biodiversity Hotspots

(2015) Susan E. Piacenza et al.   PLoS One

Spatial semiparametric models improve estimates of species abundance and distribution

(2014) Andrew Olaf Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Integrating scientific guidance into marine spatial planning

(2014) A. Rassweiler et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

Oceanographic influences on patterns in North Pacific salmon abundance

(2013) Megan M. Stachura et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

Marine Taxa Track Local Climate Velocities

(2013) M. L. Pinsky et al.   SCIENCE

Detecting diversity: emerging methods to estimate species diversity

(2013) Kelly J. Iknayan et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodiversity of man-made open habitats in an underused country: a class of multispecies abundance models for count data

(2012) Yuichi Yamaura et al.   BIODIVERSITY AND CONSERVATION

Developing Dynamic Mechanistic Species Distribution Models: Predicting Bird-Mediated Spread of Invasive Plants across Northeastern North America

(2011) Cory Merow et al.   AMERICAN NATURALIST

Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents

(2011) W. D. Kissling et al.   JOURNAL OF BIOGEOGRAPHY

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Models for inference in dynamic metacommunity systems

(2010) Robert M. Dorazio et al.   ECOLOGY

Making more out of sparse data: hierarchical modeling of species communities

(2010) Otso Ovaskainen et al.   ECOLOGY

Statistical Agent-Based Models for Discrete Spatio-Temporal Systems

(2010) Mevin B. Hooten et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

A dynamic species distribution model ofGlossinasubgenusMorsitans: The identification of tsetse reservoirs and refugia

(2010) MARK H. DeVISSER et al.   Ecosphere

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

Multi-species occurrence models to evaluate the effects of conservation and management actions

(2009) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States

(2009) A. M. Latimer et al.   ECOLOGY LETTERS

Niche dynamics in space and time

(2008) Peter B. Pearman et al.   TRENDS IN ECOLOGY & EVOLUTION