4.7 Article

Measuring the impact of oceanographic indices on species distribution shifts: The spatially varying effect of cold-pool extent in the eastern Bering Sea

Journal

LIMNOLOGY AND OCEANOGRAPHY
Volume 64, Issue 6, Pages 2632-2645

Publisher

WILEY
DOI: 10.1002/lno.11238

Keywords

-

Ask authors/readers for more resources

Oceanographers have spent decades developing annual indices that summarize physical conditions in marine ecosystems. Examples include the Pacific Decadal Oscillation, summarizing annual variation in the location of warm waters in the North Pacific, and cold-pool extent (CPE), summarizing the area with cold near-bottom waters in the eastern Bering Sea. However, these indices are rarely included in the species distribution models that are used to identify and forecast distribution shifts under future climate scenarios. I therefore review three interpretations of spatially varying coefficient models, explain how they can be used to estimate spatial patterns of population density associated with oceanographic indices, and add this option to the multivariate spatiotemporal model VAST. I then use a case study involving bottom trawl data for 17 fish and decapod species in the eastern Bering Sea 1982-2017 to answer: does a spatially varying coefficient model for CPE explain variation in spatial distribution for species in this region? And (2) does a spatially varying effect of CPE remain substantial even when local temperature is also included as a covariate? Results show that CPE and local bottom temperature are both identified as parsimonious by Akaike Information Criterion for 13 of 17 species, jointly explain nearly 9%-14% of spatiotemporal variation on average, and CPE does explain variation in excess of local temperature alone. I therefore conclude that spatially varying coefficient models are a useful way to assimilate oceanographic indices within species distribution models, and hypothesize that these will be useful to account for decadal-scale variability within multidecadal forecasts of distribution shift.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Fisheries

Impacts of fisheries-dependent spatial sampling patterns on catch-per-unit-effort standardization: A simulation study and fishery application

Nicholas D. Ducharme-Barth, Arnaud Gruss, Matthew T. Vincent, Hidetada Kiyofuji, Yoshinori Aoki, Graham Pilling, John Hampton, James T. Thorson

Summary: Abundance indices derived from fisheries-dependent data have the potential for bias, but spatiotemporal delta-GLMMs can better standardize and predict abundance in unfished areas, improving the estimation of fisheries stock assessments. However, further evaluation is needed on the performance of spatiotemporal delta-GLMMs in situations where fisheries spatial sampling patterns change over time.

FISHERIES RESEARCH (2022)

Article Fisheries

Identifying species complexes based on spatial and temporal clustering from joint dynamic species distribution models

Kristen L. Omori, James T. Thorson

Summary: This article investigates the management of data-limited species by grouping them into species complexes. By analyzing spatial and temporal similarities among species using cluster analysis and species distribution models, the study finds that some rockfish species can be consistently grouped together, although the arrangement and number of clusters may vary depending on the data used.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Fisheries

A spatial statistical approach for identifying population structuring of marine fish species: European sprat as a case study

Martin Lindegren, Mikael van Deurs, Aurore Maureaud, James T. Thorson, Dorte Bekkevold

Summary: Many marine fish species have wide distribution, but failing to acknowledge distinct populations within these species may lead to overestimation of stock's harvest potential. This study developed a statistical approach to identify population boundaries for European sprat, revealing regional differences in abundance patterns and confirming genetic studies showing reproductive isolation between different regions. The statistical approach can complement genetic methods and guide spatial management efforts for sustainable exploitation under changing climate conditions.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Fisheries

Development and simulation testing for a new approach to density dependence in species distribution models

James T. Thorson

Summary: This study demonstrates the importance of density dependence in species distribution models and proposes several new approaches to address density dependence. They find that the impact of species abundance on habitats is spatiotemporally varied, and this relationship can be detected using SDMs.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Ecology

Titmice are a better indicator of bird density in Northern European than in Western European forests

Mira H. Kajanus, Jukka T. Forsman, Maximilian G. R. Vollstadt, Vincent Devictor, Merja Elo, Aleksi Lehikoinen, Mikko Monkkonen, James T. Thorson, Sami M. Kivela

Summary: Titmice can serve as indicators of bird density in Northern European forest bird communities, encouraging the use of titmice observations by even less-experienced observers in citizen science monitoring.

ECOLOGY AND EVOLUTION (2022)

Article Fisheries

The estimated impact of changes to otolith field-sampling and ageing effort on stock assessment inputs, outputs, and catch advice

Matthew R. Siskey, Andre E. Punt, Peter-John F. Hulson, Meaghan D. Bryan, James N. Ianelli, James T. Thorson

Summary: This study developed a framework for evaluating the impact of survey sampling designs on stock assessments and found that decreasing the number of tows sampled led to an increase in the uncertainty of the overfishing limit (OFL). The study also found that reducing the number of otoliths per tow had a smaller impact on OFL uncertainty. Applying this framework to all monitored stocks is important to identify which stocks benefit the most from increased sampling or have the least impact on OFL uncertainty with reduced sampling.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2023)

Article Fisheries

Incorporating distribution shifts and spatio-temporal variation when estimating weight-at-age for stock assessments: a case study involving the Bering Sea pollock (Gadus chalcogrammus)

Julia Indivero, Timothy E. Essington, James N. Ianelli, James T. Thorson

Summary: Environmental conditions can lead to variability in growth and distribution processes, but current stock assessment methods often neglect these patterns. This study used data on walleye pollock in the Bering Sea to demonstrate a feasible approach for incorporating spatially unbalanced size-at-age samples into stock assessments. The analysis revealed extensive variation in size-at-age at fine spatial scales, with year-to-year differences in spatial patterning. Integrating spatiotemporally explicit size-at-age processes improved stock assessment consistency and provided insights into demographic processes. This approach could enhance stock-assessment forecasts under climate change.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Ecology

Do large-scale associations in birds imply biotic interactions or environmental filtering?

Merja Elo, Mira H. Kajanus, Jere Tolvanen, Vincent Devictor, Jukka T. Forsman, Aleksi Lehikoinen, Mikko Monkkonen, James T. Thorson, Maximilian G. R. Vollstadt, Sami M. Kivela

Summary: This study investigates the impacts of environmental filtering and biotic interactions on spatial and temporal associations among bird species using a novel hypothesis-testing framework based on joint dynamic species distribution models and functional trait similarity. The findings suggest that the aggregation of species is mainly driven by environmental filtering and heterospecific attraction, with no evidence of competition.

JOURNAL OF BIOGEOGRAPHY (2023)

Article Fisheries

Spatially varying catchability for integrating research survey data with other data sources: case studies involving observer samples, industry-cooperative surveys, and predators as samplers

Arnaud Gruss, James T. Thorson, Owen F. Anderson, Richard L. O'Driscoll, Madison Heller-Shipley, Scott Goodman

Summary: This study developed a spatio-temporal modelling framework that integrates research survey data and other data sources. It demonstrated the effectiveness of this framework through two case studies.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2023)

Article Biodiversity Conservation

Spatially varying coefficients can improve parsimony and descriptive power for species distribution models

James T. Thorson, Cheryl L. Barnes, Sarah T. Friedman, Janelle L. Morano, Margaret C. Siple

Summary: Species distribution models (SDMs) are commonly used to analyze the relationship between species occurrence/density and environmental conditions, often including a spatially correlated variable. Spatially varying coefficients (SVCs) in SDMs have received less attention but have the potential to improve interpretability and descriptive power. This article reviews the benefits of using SVCs in ecological contexts such as ecological teleconnections, density-dependent habitat selection, spatially varying detectability, and interactions with unmeasured covariates. Detailed examples using the vector autoregressive spatio-temporal (VAST) model illustrate the advantages of SVCs in analyzing decadal trends, community assembly, and population dynamics. SVCs extend the capabilities of SDMs and enhance our understanding of ecological processes.

ECOGRAPHY (2023)

Article Ecology

Identifying direct and indirect associations among traits by merging phylogenetic comparative methods and structural equation modelsKey-words

James T. T. Thorson, Aurore A. A. Maureaud, Romain Frelat, Bastien Merigot, Jennifer S. S. Bigman, Sarah T. T. Friedman, Maria Lourdes D. Palomares, Malin L. L. Pinsky, Samantha A. A. Price, Peter Wainwright

Summary: This study extends previous methods by using structural equation models and associations among categorical traits to achieve mixed-trait imputation. Results show that a one-degree increase in habitat temperature is associated with an average 3.5% increase in natural mortality and a 3.0% decrease in fecundity.

METHODS IN ECOLOGY AND EVOLUTION (2023)

Article Fisheries

Integrating survey and observer data improves the predictions of New Zealand spatio-temporal models

A. Gruess, A. R. Charsley, J. T. Thorson, O. F. Anderson, R. L. O'Driscoll, B. Wood, O. N. Breivik, C. A. O'Leary

Summary: Species distribution models often require multiple data sources to achieve their objectives. In this study, we developed a spatio-temporal modelling framework that integrated research survey data and observer data from fishing vessels, while accounting for physical barriers. Applying this framework to deepwater fisheries in New Zealand, we found that using both observer-only data and integrated data is essential for mapping fish biomass at a large scale and interpolating local biomass indices in years without survey data. We also demonstrated the importance of considering the reliability of interannual variability when choosing between models relying on integrated data or survey-only data for a given geographic area. Moreover, our simulation experiment revealed that the predictions of our spatio-temporal models were not significantly affected by the presence of physical barriers.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Fisheries

Spatio-temporal species distribution models reveal dynamic indicators for ecosystem-based fisheries management

J. J. Badger, S. Large, J. T. Thorson

Summary: Many economic sectors rely on marine ecosystem services, and integrated ecosystem assessments (IEAs) are necessary for holistic management and sustainable use. This study demonstrates the utility of spatially and temporally explicit ecological indicators in assessing ecosystem performance and identifying localized processes. The examples highlight the benefits of spatio-temporal methods for integrated ecosystem analysis in the northeast US Shelf Ecosystem.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Fisheries

Simulating benefits, costs and trade-offs of spatial management in marine social-ecological systems

Daniel Ovando, Darcy Bradley, Echelle Burns, Lennon Thomas, James Thorson

Summary: Designing effective spatial management strategies for marine ecosystems is challenging due to their complexity and uncertainties. This paper presents a modelling framework called marlin, which can simulate the bio-economic dynamics of marine systems efficiently. The framework can be used for both management and research purposes. The study demonstrates the capabilities of marlin through two case studies on marine protected areas (MPAs) and their impacts on conservation and food production. It shows how the framework can assess the distributional outcomes and climate resilience of different MPA design strategies and fishing fleets. The paper highlights the importance of intermediate complexity simulation in predicting and managing trade-offs among conservation, fisheries yields, and distributional outcomes of management policies affected by spatial bio-economic dynamics.

FISH AND FISHERIES (2023)

Article Fisheries

Trees for fishes: The neglected role for phylogenetic comparative methods in fisheries science

James T. Thorson

Summary: Phylogenetic comparative methods (PCM) and phylogenetic structural equation models (PSEM) can replace linear models and improve performance in fisheries meta-analyses, but they are rarely applied in fisheries science.

FISH AND FISHERIES (2023)

No Data Available