Genomics of natural history collections for understanding evolution in the wild
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genomics of natural history collections for understanding evolution in the wild
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume 20, Issue 5, Pages 1153-1160
Publisher
Wiley
Online
2020-08-28
DOI
10.1111/1755-0998.13245
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Digitization and the Future of Natural History Collections
- (2020) Brandon P Hedrick et al. BIOSCIENCE
- Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research
- (2020) Katelin D Pearson et al. BIOSCIENCE
- Hybridization ddRAD‐sequencing for population genomics of nonmodel plants using highly degraded historical specimen DNA
- (2020) Patricia L. M. Lang et al. Molecular Ecology Resources
- Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland
- (2020) Jérémy Gauthier et al. Molecular Ecology Resources
- Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community
- (2020) Vanessa C. Bieker et al. Molecular Ecology Resources
- Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies
- (2019) Tom van der Valk et al. Molecular Ecology Resources
- Phylogenomics using low‐depth whole genome sequencing: A case study with the olive tribe
- (2019) Jill K. Olofsson et al. Molecular Ecology Resources
- Systems Biology of Plant-Microbiome Interactions
- (2019) Patricia A. Rodriguez et al. Molecular Plant
- Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections
- (2019) Orly Razgour et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change
- (2019) Ke Bi et al. PLoS Genetics
- Consideration of sample source for establishing reliable genetic microsatellite data from mammalian carnivore specimens held in natural history collections
- (2019) Robert C Lonsinger et al. JOURNAL OF MAMMALOGY
- Historical DNA as a tool to address key questions in avian biology and evolution: A review of methods, challenges, applications, and future directions
- (2019) Shawn M. Billerman et al. Molecular Ecology Resources
- Scientists’ warning to humanity: microorganisms and climate change
- (2019) Ricardo Cavicchioli et al. NATURE REVIEWS MICROBIOLOGY
- The presence and impact of reference bias on population genomic studies of prehistoric human populations
- (2019) Torsten Günther et al. PLoS Genetics
- The Changing Uses of Herbarium Data in an Era of Global Change: An Overview Using Automated Content Analysis
- (2019) J Mason Heberling et al. BIOSCIENCE
- More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens
- (2019) Whitney L. E. Tsai et al. Molecular Ecology Resources
- Not a limitless resource: ethics and guidelines for destructive sampling of archaeofaunal remains
- (2019) Albína Hulda Pálsdóttir et al. Royal Society Open Science
- The case of an arctic wild ass highlights the utility of ancient DNA for validating problematic identifications in museum collections
- (2019) Alisa O. Vershinina et al. Molecular Ecology Resources
- Museum epigenomics: Characterizing cytosine methylation in historic museum specimens
- (2019) Tricia L. Rubi et al. Molecular Ecology Resources
- Morphology is not a reliable taxonomic tool for the genus Lernaea: molecular data and experimental infection reveal that L. cyprinacea and L. cruciata are conspecific
- (2019) Cong J. Hua et al. Parasites & Vectors
- Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
- (2018) Maura Costello et al. BMC GENOMICS
- The revival of the extended phenotype
- (2018) Philip Hunter EMBO REPORTS
- Evolutionary consequences of epigenetic inheritance
- (2018) Martin I. Lind et al. HEREDITY
- Quantitative epigenetics and evolution
- (2018) Joshua A. Banta et al. HEREDITY
- Sample-Index Misassignment Impacts Tumour Exome Sequencing
- (2018) Daniel Vodák et al. Scientific Reports
- Adaptation of a Chytrid Parasite to Its Cyanobacterial Host Is Hampered by Host Intraspecific Diversity
- (2018) Ramsy Agha et al. Frontiers in Microbiology
- Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing
- (2018) Nadin Rohland et al. Nature Protocols
- Climate-driven declines in arthropod abundance restructure a rainforest food web
- (2018) Bradford C. Lister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Herbarium-based science in the twenty-first century
- (2018) Guillaume Besnard et al. Botany Letters
- Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations
- (2018) Raphael Eisenhofer et al. TRENDS IN MICROBIOLOGY
- Using the resurrection approach to understand contemporary evolution in changing environments
- (2017) Steven J. Franks et al. Evolutionary Applications
- Inferring Past Environments from Ancient Epigenomes
- (2017) David Gokhman et al. MOLECULAR BIOLOGY AND EVOLUTION
- Corrigendum: Shotgun metagenomics, from sampling to analysis
- (2017) Christopher Quince et al. NATURE BIOTECHNOLOGY
- Detecting taxonomic and phylogenetic signals in equid cheek teeth: towards new palaeontological and archaeological proxies
- (2017) T. Cucchi et al. Royal Society Open Science
- More than 75 percent decline over 27 years in total flying insect biomass in protected areas
- (2017) Caspar A. Hallmann et al. PLoS One
- Project Baseline: An unprecedented resource to study plant evolution across space and time
- (2016) J. R. Etterson et al. AMERICAN JOURNAL OF BOTANY
- Natural history collections as windows on evolutionary processes
- (2016) Michael W. Holmes et al. MOLECULAR ECOLOGY
- Harnessing the power of RADseq for ecological and evolutionary genomics
- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
- The Global Genome Biodiversity Network (GGBN) Data Standard specification
- (2016) G. Droege et al. Database-The Journal of Biological Databases and Curation
- Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens
- (2016) Clemens L. Weiß et al. Royal Society Open Science
- From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories
- (2016) B. Eugene Smith et al. PLoS One
- Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens
- (2016) Tomasz Suchan et al. PLoS One
- Digitization of Biodiversity Collections Reveals Biggest Data on Biodiversity
- (2015) Lawrence M. Page et al. BIOSCIENCE
- The use of museum specimens with high-throughput DNA sequencers
- (2015) Andrew S. Burrell et al. JOURNAL OF HUMAN EVOLUTION
- Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing
- (2015) Cristina Gamba et al. Molecular Ecology Resources
- Reconstructing ancient genomes and epigenomes
- (2015) Ludovic Orlando et al. NATURE REVIEWS GENETICS
- A multi-faceted approach for assessing evolutionary significant conservation units in the endangered Omphalodes littoralis subsp. gallaecica (Boraginaceae)
- (2015) Lua Lopez et al. PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS
- The future of ancient DNA: Technical advances and conceptual shifts
- (2014) Michael Hofreiter et al. BIOESSAYS
- Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance
- (2014) Michael D. Martin et al. MOLECULAR ECOLOGY
- Confronting the constraints of morphological taxonomy in the Botryosphaeriales
- (2014) B. Slippers et al. PERSOONIA
- Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics
- (2014) Mandy Man-Ying Tin et al. PLoS One
- Ancient DNA Damage
- (2013) J. Dabney et al. Cold Spring Harbor Perspectives in Biology
- Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
- (2013) Michael D. Martin et al. Nature Communications
- Monitoring adaptive genetic responses to environmental change
- (2012) MICHAEL M. HANSEN et al. MOLECULAR ECOLOGY
- Biological collections in an ever changing world: Herbaria as tools for biogeographical and environmental studies
- (2012) Claude Lavoie PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
- (2012) Tiina Särkinen et al. PLoS One
- The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
- (2012) M. E. Allentoft et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences
- (2011) Julian M. Catchen et al. G3-Genes Genomes Genetics
- Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
- (2010) A. M. Smith et al. NUCLEIC ACIDS RESEARCH
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Recent and Widespread Rapid Morphological Change in Rodents
- (2009) Oliver R. W. Pergams et al. PLoS One
- Reverse Evolution of Armor Plates in the Threespine Stickleback
- (2008) Jun Kitano et al. CURRENT BIOLOGY
- Adaptation, migration or extirpation: climate change outcomes for tree populations
- (2008) Sally N. Aitken et al. Evolutionary Applications
- Identification of genetic variants using bar-coded multiplexed sequencing
- (2008) David W Craig et al. NATURE METHODS
- Environmental change and the option value of genetic diversity
- (2008) Alistair S. Jump et al. TRENDS IN PLANT SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now