Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research

Digitization and the Future of Natural History Collections

(2020) Brandon P Hedrick et al.   BIOSCIENCE

Emerging frontiers in phenological research

(2019) Elizabeth R. Ellwood et al.   Applications in Plant Sciences

Integrating herbarium specimen observations into global phenology data systems

(2019) Laura Brenskelle et al.   Applications in Plant Sciences

Toward a large‐scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

(2019) Titouan Lorieul et al.   Applications in Plant Sciences

Phenological mismatch with trees reduces wildflower carbon budgets

(2019) J. Mason Heberling et al.   ECOLOGY LETTERS

The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

(2019) James Lendemer et al.   BIOSCIENCE

Deep learning models for plant disease detection and diagnosis

(2018) Konstantinos P. Ferentinos   COMPUTERS AND ELECTRONICS IN AGRICULTURE

The unrealized potential of herbaria for global change biology

(2018) Emily K. Meineke et al.   ECOLOGICAL MONOGRAPHS

An explainable deep machine vision framework for plant stress phenotyping

(2018) Sambuddha Ghosal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning

(2018) Mohammad Sadegh Norouzzadeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data

(2018) Brian J. Stucky et al.   Frontiers in Plant Science

Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants

(2018) Jennifer M. Yost et al.   Applications in Plant Sciences

Overlooked climate parameters best predict flowering onset: assessing phenological models using the elastic net

(2018) Isaac W. Park et al.   GLOBAL CHANGE BIOLOGY

Herbarium specimens reveal increasing herbivory over the past century

(2018) Emily K. Meineke et al.   JOURNAL OF ECOLOGY

Comparison of large-scale citizen science data and long-term study data for phenology modeling

(2018) Shawn D. Taylor et al.   ECOLOGY

Comparison of budburst phenology trends and precision among participants in a citizen science program

(2018) M. Bison et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Dermatologist-level classification of skin cancer with deep neural networks

(2017) Andre Esteva et al.   NATURE

CrowdCurio : an online crowdsourcing platform to facilitate climate change studies using herbarium specimens

(2017) Charles G. Willis et al.   NEW PHYTOLOGIST

Phenological synchronization disrupts trophic interactions between Kodiak brown bears and salmon

(2017) William W. Deacy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mining Herbaria For Clues To the Historic Prevalence of Lily Leaf Spot Disease (Pseudocercosporella inconspicua) On Gray's Lily (Lilium grayi) and Canada Lily (L. canadense)

(2017) Russell J. Ingram et al.   RHODORA

Old Plants, New Tricks: Phenological Research Using Herbarium Specimens

(2017) Charles G. Willis et al.   TRENDS IN ECOLOGY & EVOLUTION

Computer vision applied to herbarium specimens of German trees: testing the future utility of the millions of herbarium specimen images for automated identification

(2016) Jakob Unger et al.   BMC EVOLUTIONARY BIOLOGY

Deep learning

(2015) Yann LeCun et al.   NATURE

Determining past leaf-out times of New England's deciduous forests from herbarium specimens

(2014) Peter H. Everill et al.   AMERICAN JOURNAL OF BOTANY

Early pest development and loss of biological control are associated with urban warming

(2014) E. K. Meineke et al.   Biology Letters

XSEDE: Accelerating Scientific Discovery

(2014) John Towns et al.   COMPUTING IN SCIENCE & ENGINEERING

Unexpected phenological responses of butterflies to the interaction of urbanization and geographic temperature

(2014) Sarah E. Diamond et al.   ECOLOGY

The world-wide ‘fast-slow’ plant economics spectrum: a traits manifesto

(2014) Peter B. Reich   JOURNAL OF ECOLOGY

Annual plants change in size over a century of observations

(2013) Elizabeth A. Leger   GLOBAL CHANGE BIOLOGY

Cranberry flowering times and climate change in southern Massachusetts

(2013) Elizabeth R. Ellwood et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Plant-Pollinator Interactions over 120 Years: Loss of Species, Co-Occurrence, and Function

(2013) L. A. Burkle et al.   SCIENCE

Uncovering, Collecting, and Analyzing Records to Investigate the Ecological Impacts of Climate Change: A Template from Thoreau's Concord

(2012) Richard B. Primack et al.   BIOSCIENCE

Warming experiments underpredict plant phenological responses to climate change

(2012) E. M. Wolkovich et al.   NATURE

Tracking origins of invasive herbivores through herbaria and archival DNA: the case of the horse-chestnut leaf miner

(2011) David C Lees et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Continental-scale patterns of Cecropia reproductive phenology: evidence from herbarium specimens

(2011) P.-C. Zalamea et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Is rapid evolution common in introduced plant species?

(2010) Joanna M. Buswell et al.   JOURNAL OF ECOLOGY