Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community
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Title
Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community
Authors
Keywords
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Journal
Molecular Ecology Resources
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-04-22
DOI
10.1111/1755-0998.13174
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Note: Only part of the references are listed.- Long term field sampling in Sweden reveals a shift in occurrence of cytochrome b genotype and amino acid substitution F129L in Alternaria solani, together with a high incidence of the G143A substitution in Alternaria alternata
- (2019) E. Edin et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- Gapless Genome Assembly of the Potato and Tomato Early Blight Pathogen Alternaria solani
- (2018) Pieter J. Wolters et al. MOLECULAR PLANT-MICROBE INTERACTIONS
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- (2018) Patricia L. M. Lang et al. NEW PHYTOLOGIST
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- (2017) Arun Durvasula et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Research priorities for harnessing plant microbiomes in sustainable agriculture
- (2017) Posy E. Busby et al. PLOS BIOLOGY
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- (2017) Neus Nualart et al. PhytoKeys
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- (2017) Amanda C. Saville et al. PLoS One
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- (2016) Carlos Alonso-Blanco et al. CELL
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- (2016) Tae-Jin Oh et al. JOURNAL OF BIOTECHNOLOGY
- Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes
- (2016) Fátima Sánchez Barreiro et al. Molecular Ecology Resources
- Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
- (2016) Angela Glassing et al. Gut Pathogens
- Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens
- (2016) Clemens L. Weiß et al. Royal Society Open Science
- Real-Time PCR Detection of Dogwood Anthracnose Fungus in Historical Herbarium Specimens from Asia
- (2016) Stephen Miller et al. PLoS One
- Eimeria genomics: Where are we now and where are we going?
- (2015) Damer P. Blake VETERINARY PARASITOLOGY
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
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- Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance
- (2014) Michael D. Martin et al. MOLECULAR ECOLOGY
- Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
- (2014) Mikkel Schubert et al. Nature Protocols
- Genetic analyses of herbarium material: Is more care required?
- (2014) Lara Shepherd et al. TAXON
- Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries
- (2013) Meredith L. Carpenter et al. AMERICAN JOURNAL OF HUMAN GENETICS
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- DNA Analysis of Herbarium Specimens of the Grass Weed Alopecurus myosuroides Reveals Herbicide Resistance Pre-Dated Herbicides
- (2013) Christophe Délye et al. PLoS One
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- Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
- (2013) Michael D. Martin et al. Nature Communications
- Human-induced nitrogen–phosphorus imbalances alter natural and managed ecosystems across the globe
- (2013) Josep Peñuelas et al. Nature Communications
- The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
- (2013) Kentaro Yoshida et al. eLife
- Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
- (2012) N. Rohland et al. GENOME RESEARCH
- The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
- (2012) M. E. Allentoft et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
- DNA Damage in Plant Herbarium Tissue
- (2011) Martijn Staats et al. PLoS One
- Coccidiosis due to Eimeria in sheep and goats, a review
- (2011) Christophe Chartier et al. SMALL RUMINANT RESEARCH
- Prospects for biological control of Ambrosia artemisiifolia in Europe: learning from the past
- (2011) E GERBER et al. WEED RESEARCH
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- (2011) Eric Kemen et al. PLOS BIOLOGY
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- (2010) Suparna Mitra et al. ISME Journal
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- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
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- (2009) M. Thines et al. PERSOONIA
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