Quantitative epigenetics and evolution

“Conversion” of epistatic into additive genetic variance in finite populations and possible impact on long-term selection response

(2017) W.G. Hill   JOURNAL OF ANIMAL BREEDING AND GENETICS

What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?

(2017) Emily B. Josephs et al.   NEW PHYTOLOGIST

Stress-induced memory alters growth of clonal offspring of white clover (Trifolium repens)

(2016) A. P. R. Gonzalez et al.   AMERICAN JOURNAL OF BOTANY

Epigenetic variation within Phragmites australis among lineages, genotypes, and ramets

(2016) Amy E. Spens et al.   BIOLOGICAL INVASIONS

Evolutionary genetics of maternal effects

(2016) Jason B. Wolf et al.   EVOLUTION

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

The molecular hallmarks of epigenetic control

(2016) C. David Allis et al.   NATURE REVIEWS GENETICS

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis

(2016) Rik Kooke et al.   PLANT PHYSIOLOGY

DNA methylation mediates genetic variation for adaptive transgenerational plasticity

(2016) Jacob J. Herman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Epigenetics and inheritance of phenotype variation in livestock

(2016) Kostas A. Triantaphyllopoulos et al.   Epigenetics & Chromatin

Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

(2016) Stefan M. Edwards et al.   GENETICS

The Evolution of Transgenerational Integration of Information in Heterogeneous Environments

(2015) Olof Leimar et al.   AMERICAN NATURALIST

Silencing of active transposable elements in plants

(2015) Dalen Fultz et al.   CURRENT OPINION IN PLANT BIOLOGY

The Nature of Genetic Variation for Complex Traits Revealed by GWAS and Regional Heritability Mapping Analyses

(2015) A. Caballero et al.   GENETICS

Epigenetic mutations can both help and hinder adaptive evolution

(2015) Ilkka Kronholm et al.   MOLECULAR ECOLOGY

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

(2015) Jian Yang et al.   NATURE GENETICS

Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

(2015) Adriaan van der Graaf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The extended evolutionary synthesis: its structure, assumptions and predictions

(2015) Kevin N. Laland et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Bayesian Model for the Analysis of Transgenerational Epigenetic Variation

(2015) Luis Varona et al.   G3-Genes Genomes Genetics

Genotype by environment interaction and breeding for robustness in livestock

(2015) Wendy M. Rauw et al.   Frontiers in Genetics

SNPs genotyping technologies and their applications in farm animals breeding programs: review

(2014) Hamed Kharrati Koopaee et al.   BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY

Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes

(2014) Jason T. Huff et al.   CELL

Hybridization increases invasive knotweed success

(2014) Madalin Parepa et al.   Evolutionary Applications

Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?

(2014) Elizabeth J. Duncan et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Epigenetics: a potential mechanism for clonal plant success

(2014) Vladimir Douhovnikoff et al.   PLANT ECOLOGY

Epigenetic Inheritance, Epimutation, and the Response to Selection

(2014) Robert E. Furrow   PLoS One

Stress and the dynamic genome: Steroids, epigenetics, and the transposome: Fig. 1.

(2014) Richard G. Hunter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Epigenetic Basis of Complex Traits

(2014) S. Cortijo et al.   SCIENCE

The use of epigenetic phenomena for the improvement of sheep and cattle

(2014) Michael E. Goddard et al.   Frontiers in Genetics

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

How epigenetic mutations can affect genetic evolution: Model and mechanism

(2013) Filippos D. Klironomos et al.   BIOESSAYS

HOW STABLE ‘SHOULD’ EPIGENETIC MODIFICATIONS BE? INSIGHTS FROM ADAPTIVE PLASTICITY AND BET HEDGING

(2013) Jacob J. Herman et al.   EVOLUTION

EPIGENETIC VARIATION IN ASEXUALLY REPRODUCING ORGANISMS

(2013) Koen J.F. Verhoeven et al.   EVOLUTION

Patterns of DNA Methylation Throughout a Range Expansion of an Introduced Songbird

(2013) A. L. Liebl et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

An Evolutionary Perspective on Epistasis and the Missing Heritability

(2013) Gibran Hemani et al.   PLoS Genetics

Evidence for an epigenetic role in inbreeding depression

(2012) P. Vergeer et al.   Biology Letters

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

(2012) Daniel Nätt et al.   BMC GENOMICS

Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator

(2012) Roberto Bonasio et al.   CURRENT BIOLOGY

Quantitative Genetics in the Genomics Era

(2012) William G. Hill   CURRENT GENOMICS

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

(2012) Christina L. Richards et al.   ECOLOGY LETTERS

A chromatin link to caste identity in the carpenter ant Camponotus floridanus

(2012) D. F. Simola et al.   GENOME RESEARCH

Transgenerational effects of early experience on behavioral, hormonal and gene expression responses to acute stress in the precocial chicken

(2012) Vivian C. Goerlich et al.   HORMONES AND BEHAVIOR

Epigenetic state and expression of imprinted genes in umbilical cord correlates with growth parameters in human pregnancy

(2012) Ai Lin Lim et al.   JOURNAL OF MEDICAL GENETICS

Epigenetic variation creates potential for evolution of plant phenotypic plasticity

(2012) Yuan-Ye Zhang et al.   NEW PHYTOLOGIST

Germline DNA Demethylation Dynamics and Imprint Erasure Through 5-Hydroxymethylcytosine

(2012) J. A. Hackett et al.   SCIENCE

Exploring epiallele stability in a population-epigenetic model

(2012) Jemma L. Geoghegan et al.   THEORETICAL POPULATION BIOLOGY

A Unified Approach to the Evolutionary Consequences of Genetic and Nongenetic Inheritance

(2011) Troy Day et al.   AMERICAN NATURALIST

Epigenetic Gene Promoter Methylation at Birth Is Associated With Child's Later Adiposity

(2011) K. M. Godfrey et al.   DIABETES

On epigenetics and epistasis: hybrids and their non-additive interactions

(2011) Lisa M Smith et al.   EMBO JOURNAL

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs

(2011) Padubidri V Shivaprasad et al.   EMBO JOURNAL

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

Three epigenetic information channels and their different roles in evolution

(2011) N. SHEA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Regulatory RNA: The New Age

(2011) Feng Chen et al.   MOLECULAR CELL

The genetic basis of evolution, adaptation and speciation

(2011) VANDA T. K. McNIVEN et al.   MOLECULAR ECOLOGY

Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast

(2011) C. M. HERRERA et al.   MOLECULAR ECOLOGY

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Population-epigenetic models of selection

(2011) Jemma L. Geoghegan et al.   THEORETICAL POPULATION BIOLOGY

A twin approach to unraveling epigenetics

(2011) Jordana T. Bell et al.   TRENDS IN GENETICS

Quantitative Genetics of Genomic Imprinting: A Comparison of Simple Variance Derivations, the Effects of Inbreeding, and Response to Selection

(2011) Anna W. Santure et al.   G3-Genes Genomes Genetics

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Epigenetic Memory in Mammals

(2011) Zoë Migicovsky et al.   Frontiers in Genetics

Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses

(2010) Tim F. Oberlander et al.   Epigenetics

Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana

(2010) Oliver Bossdorf et al.   EVOLUTIONARY ECOLOGY

Epigenetic Contribution to Covariance Between Relatives

(2010) O. Tal et al.   GENETICS

The fuel of evolution

(2010) C López-Fanjul et al.   HEREDITY

Epigenetics and gene expression

(2010) E R Gibney et al.   HEREDITY

Understanding natural epigenetic variation

(2010) Christina L. Richards et al.   NEW PHYTOLOGIST

Genotype–environment interactions and their translational implications

(2010) Tesfaye M Baye et al.   Personalized Medicine

The development of Arabidopsis as a model plant

(2010) Maarten Koornneef et al.   PLANT JOURNAL

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

Plant phenotypic plasticity in a changing climate

(2010) A.B. Nicotra et al.   TRENDS IN PLANT SCIENCE

Rare Variants Create Synthetic Genome-Wide Associations

(2010) Samuel P. Dickson et al.   PLOS BIOLOGY

Nongenetic Inheritance and Its Evolutionary Implications

(2009) Russell Bonduriansky et al.   Annual Review of Ecology Evolution and Systematics

An operational definition of epigenetics

(2009) S. L. Berger et al.   GENES & DEVELOPMENT

Epigenetic Inheritance and the Missing Heritability Problem

(2009) M. Slatkin   GENETICS

Stress-induced DNA methylation changes and their heritability in asexual dandelions

(2009) Koen J. F. Verhoeven et al.   NEW PHYTOLOGIST

Inheritance of Acquired Behaviour Adaptations and Brain Gene Expression in Chickens

(2009) Daniel Nätt et al.   PLoS One

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

(2009) Eva Jablonka et al.   QUARTERLY REVIEW OF BIOLOGY

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese knotweed s. l. (Fallopia japonica and F.xbohemica, Polygonaceae)

(2008) C. L. Richards et al.   AMERICAN JOURNAL OF BOTANY

Nutritional Control of Reproductive Status in Honeybees via DNA Methylation

(2008) R. Kucharski et al.   SCIENCE

Brassica oleracea displays a high level of DNA methylation polymorphism

(2007) Armel Salmon et al.   PLANT SCIENCE